Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01687 ATGTATTCCAATAAAAAGGGCAAGGAAGATGGCAAAGCTGAGCATCGTTACATGGAAACCGACCCAACTGGTCGCTATGCCAGGGTTGGGGATATTCTTGGAAAAGGGGCAATGAAAACAGTGTATAAAGCAATTGATGAGGTCCTTGGAATAGAGGTAGCATGGAACCAGGTCAAACTCAATGAGGCACTTCGTACACCAGAGGACTTGGAGCGGCTTTATTTAGAGGTTCACCTCCTCAGTACCCTCAAGCACCAATCCATCATTCGATTCTATACCTCATGGATTGATGTTGACAACAGGACCTTTAACTTCATTACAGAAATGTTCACTTCTGGGACACTCAGAGAATACAGGAAGAAATATAAGCATATTGGCATACAAGCAATAAAGAGCTGGACTCGCCAAATCTTACAGGGTCTTGTTTATCTACATGAACATGATCCTCCAGTAATTCATAGGGACCTCAAATGTGATAACATATTTGTCAATGGCCATCTTGGACAAGTGAAAATTGGTGACCTGGGTCTAGCAGCAATTCTCCGTGGTTCCCAGCCAGCTCATAGTGTTATAGGTACCCCAGAGTTCATGGCACCAGAATTGTATGAAGAAGAATACAATGAACTTGTTGATGTGTACTCATTTGGCATGTGTGTTTTGGAAATGCTCACATCTGAGTATCCATATAGTGAATGTGCTAATCCTGCACAGATATACAAGAAAGTGACATCGGGGAAGCTACCGGCAGCACTTTTCCGGATTGAAGACACAGAGGCACAGAAGTTTATTGGCAAATGCCTTGTAACTGCAGAAAAGAGACCATCAGCAAAAGAATTGTTGAATGATCCATTTCTTGTGTCTGATGATGCGTCATCAATAACAAAGATTGCAATGCCAAATCCGTTTTTAAACTACAGTGAGATGGATAAACTTCAATTGAGGGATGATACACCTAGGACTGAAATGTCAATAACTGGGAAGCTGAATCCTGAAGATGATACTATCTTTCTCAAAGTGCAAATTGCTGACAAGGATGGTTCTGCTAGGAACGTATATTTTCCCTTTGACATTTTCTCTGACACCCCCATTGATGTTGCAACGGAGATGGTGAAAGAATTGGAGATCACAGATTGGGAGCCTTCTGAAATTGCAAATATGATAGAAGGAGAGATATCTTTGCTGCTGCCAAATAGGAGGAATAGTAATTGTTCAAATACCTGCCGTACATTCAGTTATCAAGATGATGATGATGATGAAGGTCCTCACCATCATTTCCACTCTGTCTCTTCTCGTTCGTCATCCCAAGAATCAACATCAGGGTTAGCCAGTAGAGTTGGTGACATATCAAATGGATGTTATTGGCTGCATGATGATATGCATGATGATGCCAGTTCACGATGCTCTTCACATGGGACATATTCCAACTTGAACTTTTCTTCTGTGGAAGACCAGGACTACAATGTGGCTTCTACAAGGAAAGATAAACATGCCATCATAAAGAGTCACCACAAGTGTACAAGGTTTCCACATGGTGAAGACCATATCACTTTGAACCAGTGCAGAGTTTTAGCTGGACCACAAGCACCTTCTTCTAGTAAAAATAAGAGGATGATGGACAATCGTAGACTAACAAGGAACAATTCACTAATTGATATGAGGAGCCAATTACTACACAGATCACTGGTTGAGGAGGTAAACAGAAGACGGCTATTCAAGACTGTTGGAGCTGTGGAAAATATTGGATTTCATTCACCTTATGAGGTTACAAGCAAAATGTCACAGCCAGTACGTGGTGCTTTAGATGTGAAATCTTCATGGAGTGGCAAGGGACAAAACTTAAGAGCTCAAAAAAAGTAA 1857 0.413 MYSNKKGKEDGKAEHRYMETDPTGRYARVGDILGKGAMKTVYKAIDEVLGIEVAWNQVKLNEALRTPEDLERLYLEVHLLSTLKHQSIIRFYTSWIDVDNRTFNFITEMFTSGTLREYRKKYKHIGIQAIKSWTRQILQGLVYLHEHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILRGSQPAHSVIGTPEFMAPELYEEEYNELVDVYSFGMCVLEMLTSEYPYSECANPAQIYKKVTSGKLPAALFRIEDTEAQKFIGKCLVTAEKRPSAKELLNDPFLVSDDASSITKIAMPNPFLNYSEMDKLQLRDDTPRTEMSITGKLNPEDDTIFLKVQIADKDGSARNVYFPFDIFSDTPIDVATEMVKELEITDWEPSEIANMIEGEISLLLPNRRNSNCSNTCRTFSYQDDDDDEGPHHHFHSVSSRSSSQESTSGLASRVGDISNGCYWLHDDMHDDASSRCSSHGTYSNLNFSSVEDQDYNVASTRKDKHAIIKSHHKCTRFPHGEDHITLNQCRVLAGPQAPSSSKNKRMMDNRRLTRNNSLIDMRSQLLHRSLVEEVNRRRLFKTVGAVENIGFHSPYEVTSKMSQPVRGALDVKSSWSGKGQNLRAQKK. 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01687 618 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Seca5g01687 618 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01687 618 MobiDBLite consensus disorder prediction 414 443 - -
Seca5g01687 618 Gene3D Transferase(Phosphotransferase) domain 1 110 293 - -
Seca5g01687 618 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 9 508 - -
Seca5g01687 618 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01687 618 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01687 618 CDD STKc_WNK 25 285 - -
Seca5g01687 618 FunFam probable serine/threonine-protein kinase WNK9 110 290 - -
Seca5g01687 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Seca5g01687 618 MobiDBLite consensus disorder prediction 427 443 - -
Seca5g01687 618 SUPERFAMILY Protein kinase-like (PK-like) 28 317 IPR011009 -
Seca5g01687 618 FunFam Probable serine/threonine-protein kinase WNK1 12 108 - -
Seca5g01687 618 Gene3D - 315 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01687 Seca-Chr5 50580305 50585705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01687 17 591 MAP Kinase Kinase Kinase AT5G58350 60.720 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Seca5g01687 Pkinase 8.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01687 K08867 - gmx:100778102 982.245