Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01685 ATGCCGGAGATCGAACATGCGGCGGAGGCAACCGCCCTGTTCGGTAAATACGAGCTGGGCAGGGTCCTTGGCTGCGGAGCATTCGCCAAAGTGTACTACGCGCGCAATGTGCAAACGGGTCAGAGCGTGGCTGTGAAAATCATCAACAAGAAGAAGCTCGCCGGAACGGGACTCGCCGGCAATGTGAAACGCGAGATTAGCATCATGAGCCGTCTCCACCACCCCCACATTGTTCGCCTCCACGAGGTTCTCGCAACGAAGACGAAGATCTTCTTCGTCATGGACTTCGTTCGCGGCGGTGAGCTCTTCGCGAAGATCTCAAAGGGTCGTTTCTCCGAGGATCTCAGCCGTCGGTATTTTCACCAGTTGATCTCCGCCGTCGGGTACTGCCATTCCCGCGGCGTTTTCCACCGCGATCTCAAGCCGGAGAATCTCCTCCTCGACGAGAACGGCAACTTGAAAGTTACGGATTTCGGGTTGAGTGCTGTTAGGGATCAGATCCGACCCGACGGGTTGCTCCATACCCTTTGTGGTACCCCTGCTTACGTGGCACCGGAGATTCTCGCTAAGAAAGGCTATGATGGGGCTAAAGTCGATGTTTGGTCCTGCGGCGTCGTTTTGTTCGTTCTCACTGCTGGGTACCTTCCACTCAATGACCCGAATTTGATGGTCATGTACCGGAAGATCTACAAGGGTGAATTCCGGTGCCCCAGGTGGATGTCACCGGAGCTACGGCGGTTCCTGTCCAAGTTGCTTGACACCAACCCGGAAACCCGGATAACCGTCGACGGGATGACCCGGGACCCGTGGTTCAAGAAGGGGTACAAGGAGATAAAGTTTCACGAGGAGGATTATGGATCCGAGTCACGTCACGGGTACGGGTCGAAGGGTGATGGGTCGGAGGTGTTGAACTTGAACGCCGGGTTTGGATTGTCCGGGTTGTTCGGGCAATCGAGCGATGGAGAGCGGTTGGTGGTAAGGGAGTCACCGGAGAAGATTCTGGAGGCGGCGGAGGAGCTGGGTGCGGCGGAGGGGATGGCGGTGAGGTGGAAGAAGGAATGTGGGGTGGAGCTGGAAGGGCTAAATGGGAATTTCGGAATTGGGATTGAGGTTTACCGGTTAACGGCGGAGCTGGCGGTGATTGAGGTTAAGAGGAGGTGTGGCGACGCCGTGGCCTTCAAGAATTTGTGGGACATCAAGCTCAGACCTCAGCTTCTTAGCGGTGGTGCAACGACGTCGCATCATCACGATCCTGACTCCTGA 1263 0.5637 MPEIEHAAEATALFGKYELGRVLGCGAFAKVYYARNVQTGQSVAVKIINKKKLAGTGLAGNVKREISIMSRLHHPHIVRLHEVLATKTKIFFVMDFVRGGELFAKISKGRFSEDLSRRYFHQLISAVGYCHSRGVFHRDLKPENLLLDENGNLKVTDFGLSAVRDQIRPDGLLHTLCGTPAYVAPEILAKKGYDGAKVDVWSCGVVLFVLTAGYLPLNDPNLMVMYRKIYKGEFRCPRWMSPELRRFLSKLLDTNPETRITVDGMTRDPWFKKGYKEIKFHEEDYGSESRHGYGSKGDGSEVLNLNAGFGLSGLFGQSSDGERLVVRESPEKILEAAEELGAAEGMAVRWKKECGVELEGLNGNFGIGIEVYRLTAELAVIEVKRRCGDAVAFKNLWDIKLRPQLLSGGATTSHHHDPDS. 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01685 420 FunFam Non-specific serine/threonine protein kinase 7 296 - -
Seca5g01685 420 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 386 - -
Seca5g01685 420 Gene3D Kinase associated domain 1, KA1 301 407 - -
Seca5g01685 420 SUPERFAMILY Protein kinase-like (PK-like) 14 279 IPR011009 -
Seca5g01685 420 CDD CIPK_C 308 405 - -
Seca5g01685 420 Gene3D Transferase(Phosphotransferase) domain 1 7 297 - -
Seca5g01685 420 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01685 420 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Seca5g01685 420 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01685 420 Pfam NAF domain 305 349 IPR004041 GO:0007165
Seca5g01685 420 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01685 420 FunFam Non-specific serine/threonine protein kinase 8 96 - -
Seca5g01685 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01685 Seca-Chr5 50543826 50545111 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01685 1 413 CBL-interacting serine-threonine protein kinases AT2G30360 63.403 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca5g01685 Pkinase 1.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01685 - - gsj:114377188 681.789