Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01680 ATGTGCCTTCTTGACTGCTGCTCTGTCTCTGAGATCCATGAGGTGATATGCTTGCTACTACTGCCCCATTTAATGCTTGACAAGAGTGGACCACAAATTTATAGCTCATTCATACCCTTGATGCACAATTGGCACAAAAGTTTTTTTAGAGTGCCTGTTCTGCTAATACGTCTCATGGAGAATAAATCAAATATCTTAATGCAAAGATATGAATTAGGAAGATTACTAGGCCAGGGCACTTTCGGAAAGGTTTACTATGCAAGGAGTACAATGAATAACCAGAGTGTGGCTATCAAAGTGATTGACAAAGATAAGGTTATGAGAACTGGGCAAGCTGATCAAATCAAGCGTGAAATATCTGTTATGAGGCTGGCTAGACACCCCAATATTATACATCTTATTGAGGTTATGGCCAACAAGAGTAAGATTTACTTTGTTATGGAATATGCTAAAGGTGGTGAGCTTTTCAACAAGGTGGCTAAAGGAAAACTCAAAGAAGGTGTTGCTCACAAATATTTTAAGCAGCTAATCAATGCAGTAGATTTTTGTCACAGTAGAGGCGTGTACCACCGAGACATAAAGCCTGAGAACATTCTATTGGATGAAAATGGGAATTTAAAGGTCTCTGATTTTGGGTTAAGTGCTCTTGCTGAATCCAAGCGGCAGGATGGCTTACTCCATACACCTTGTGGTACCCCTGCCTATGTTGCTCCTGAAGTAATCAAAAGGAAGGGATATGACGGTGCCAAAGCTGATATTTGGTCTTGTGGAATAGTTCTATTTGTCTTATTGGCAGGCTATCTCCCTTTTCATGACTCAAATTTGGTAGAGATGTATAGGAAGATAAGTAAAGCAGAATTGAAATACCCTAATTGGTTCCCACCAGAAGTATGCAAGCTGTTGGGCATGATGTTGGATCCAAATCCTGACACTAGGATTTCCATAGCTATGGTTAGGGAAGATCGTTGGTTTAAGAAAGGACCAAATCCTAGAAATAAAAAACCTGTAGTGGAAAACAACACTGTCTCTTCTTCAGGTACAATTCCTTCTGATAAAATTGATGAAAGTGATGGCCTAGCAGCAGAAGCAAAGGAAGAGTCGGTTGTGCCCGTAAGTATAAATGCCTTTGATATCATCTCCCTTTCTGCTGGTTTTGATCTTTCTAGATTCTTTGATGAGAGTTTTCAGAAAAGGGAAGCTAGATTTAGTTCAAAACTACCTGCGTCAGTCATCATCTCCAAGCTGGAAGACATTGCTAGGCAACTGAGGATGAAAATAAAGAAAAAAGCTGCTGGTTTATTGAAATTAGAGGGCTTCAAGGAAGGTAGAAAAGGGGTTTTATCCATTGATGCAGAGATATTTGAGGTTACTCCTCTTTTCCATTTGGTGGAGGTGAAAAAGTCAAATGGAGATACATTGGAATATCAGAAAATATTGAAAGAGGATATAAGGCCTGCTCTTCAGGATATTGTTTGGGTCTGGCAAAGTGATCAACAACTTCAATCACAACAGTCAGAGCAACCTATACATGACCAACAGCAACAAGAAACACAGTCATAA 1560 0.3962 MCLLDCCSVSEIHEVICLLLLPHLMLDKSGPQIYSSFIPLMHNWHKSFFRVPVLLIRLMENKSNILMQRYELGRLLGQGTFGKVYYARSTMNNQSVAIKVIDKDKVMRTGQADQIKREISVMRLARHPNIIHLIEVMANKSKIYFVMEYAKGGELFNKVAKGKLKEGVAHKYFKQLINAVDFCHSRGVYHRDIKPENILLDENGNLKVSDFGLSALAESKRQDGLLHTPCGTPAYVAPEVIKRKGYDGAKADIWSCGIVLFVLLAGYLPFHDSNLVEMYRKISKAELKYPNWFPPEVCKLLGMMLDPNPDTRISIAMVREDRWFKKGPNPRNKKPVVENNTVSSSGTIPSDKIDESDGLAAEAKEESVVPVSINAFDIISLSAGFDLSRFFDESFQKREARFSSKLPASVIISKLEDIARQLRMKIKKKAAGLLKLEGFKEGRKGVLSIDAEIFEVTPLFHLVEVKKSNGDTLEYQKILKEDIRPALQDIVWVWQSDQQLQSQQSEQPIHDQQQQETQS. 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01680 519 FunFam Non-specific serine/threonine protein kinase 368 492 - -
Seca5g01680 519 Gene3D Transferase(Phosphotransferase) domain 1 61 372 - -
Seca5g01680 519 MobiDBLite consensus disorder prediction 327 349 - -
Seca5g01680 519 ProSiteProfiles Protein kinase domain profile. 70 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01680 519 ProSiteProfiles NAF domain profile. 368 392 IPR018451 GO:0007165
Seca5g01680 519 Gene3D Kinase associated domain 1, KA1 373 493 - -
Seca5g01680 519 MobiDBLite consensus disorder prediction 334 349 - -
Seca5g01680 519 Pfam NAF domain 370 428 IPR004041 GO:0007165
Seca5g01680 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Seca5g01680 519 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 61 487 - -
Seca5g01680 519 FunFam Non-specific serine/threonine protein kinase 61 149 - -
Seca5g01680 519 SMART serkin_6 70 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01680 519 SUPERFAMILY Protein kinase-like (PK-like) 66 341 IPR011009 -
Seca5g01680 519 FunFam Non-specific serine/threonine protein kinase 63 366 - -
Seca5g01680 519 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Seca5g01680 519 CDD CIPK_C 374 488 - -
Seca5g01680 519 Pfam Protein kinase domain 70 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01680 Seca-Chr5 50468038 50469727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01680 59 498 CBL-interacting serine-threonine protein kinases AT5G58380 67.257 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca5g01680 Pkinase 2.5e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01680 - - gmx:100790905 757.288