Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01666 ATGCCAGGCTACTATAACTCAATCATTAAGGGTGTATCAACCATCATGGTCTCTTACTCAAGCTGGAATGGAGAAAAGATGCATGCTAATCATGATCTAATCACTGGCTTTCTCAAGAACACACTTTGTTTCAGGGAGGGTCACAGGGTTACTCTAAATGTTTATGACCTAAGCCAAGGGCTTGCTCGACAGCTCTCAATGTCTTTTTTGGGGAAGGCTATTGAAGGCATTTGGCACACAGGAATTGTGGTTTATGGTAACGAGTATTTCTTTGGTGGGGGCATACAACATTCTCCTGCTGGATTAACACCATATGAACCAGAAGTACTAGTTGGCGGGAGTGACTTCTATGCATTCCCACGTCTAGATCCTAAAAGTGAAAGAATAGCATGGATACAATGGAGTCACCCCAACATGCCCTGGGATAAATTAAGGGAACTTGATAGAACTAGTCCCATAGGACCATCTGAAGCTAGAGTTTATGCCTATACCAAGGATAGATATTGCTTATCAAGAAGGCTACACTACTGCACTGGTACTTCCACTAGCTAG 552 0.4293 MPGYYNSIIKGVSTIMVSYSSWNGEKMHANHDLITGFLKNTLCFREGHRVTLNVYDLSQGLARQLSMSFLGKAIEGIWHTGIVVYGNEYFFGGGIQHSPAGLTPYEPEVLVGGSDFYAFPRLDPKSERIAWIQWSHPNMPWDKLRELDRTSPIGPSEARVYAYTKDRYCLSRRLHYCTGTSTS. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01666 183 Gene3D - 1 47 IPR036962 GO:0004553|GO:0005975
Seca5g01666 183 PANTHER PERIPLASMIC BETA-GLUCOSIDASE-RELATED 1 45 - -
Seca5g01666 183 Pfam PPPDE putative peptidase domain 48 108 IPR008580 GO:0008233
Seca5g01666 183 Gene3D PPPDE domains 48 146 IPR042266 -
Seca5g01666 183 SMART DUF862_2a 48 144 IPR008580 GO:0008233
Seca5g01666 183 ProSiteProfiles PPPDE domain profile. 48 183 IPR008580 GO:0008233
Seca5g01666 183 SUPERFAMILY (Trans)glycosidases 1 45 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01666 Seca-Chr5 50301731 50303745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01666 95 143 Carbohydrate Esterase AT5G36210 69.388 4.46e-19 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01666 K22762 - gmx:100787486 124.79