Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01648 ATGGACACGGTATTCAGTTTCATACTCCTATTTCTCTTCACCTTGTCCTTCACCTACACCTTCCTCCGCTCCCTGCATTCAAAGAGACACAAACTCCCACCCGGACCACTTGGACTTCCCATTGTTGGAAACCTCCCCCAACTGGGCCAAAAGCCCCACCAAACCATGGCCAGTCTCGCCAAGATCCACGGCCCAATCATGAGCCTCAAGCTCGGCCAAGTAACCACCATAGTCATGTCTTCTTCCGACACAGCCAAAGCAGTGCTCCAAATCCACGACCAGTTCTTATCCAACAGAAAGATCCCTGACGCAATGAAAGGTGCCAACCATGACCAATACAGCTTGCCCTTCATACCAGTGTCACATAGCTGGCGTGACCTTAGAAAAATCTGCAACAACCTTCTATTCTCCAACAAGACCCTTGACGCCAGTGGAGAAGTAAGGCGCAAGAAGGTTCTAGAACTTTTCAACGACATCCGTGAGAGCATGATAAAGGGTGAAGCCGTTGATATAGGGAGGCTGGCTTTTAAGACAGCGATAAACTTGTTGTCGAACACTGTTTACTCAGAGGATTTGATCCACTCCGTGGACAAAGCAGGGGAGTTCAAGGAGCTGGTTACCAATATCATGAAAGAGGTTGGGAGACCAAATTTGGCTGATTGTTTTCCTGTGTTGAAAGTGGTTGACCCACATGGGATCAGACGGCGCACAGGTAGTTACTTTTGGAAGCTGTTGACCATCTTCAAGGGGTTGGTTGACCAACGTGTGAAGCTGAGGAAACAGAGTGATTACTGCACCAAAAATGACATGTTGGATGCCATGCTTGACAATGCTGACGCGGAGGAGATGTACAAAGATAAGATTGAGCGTTTGTCATTGGACTTGTTTGTGGCAGGTACCGATACAGTTACATCTACGGTAGAATGGGCAATGGCCGAGTTACTTCATAACCCAAATGTCATGTCTAAAGCAAAAGCCGAGTTAGAACAAACTATTGGCAAAGGCAACTTGGTTGAAGAGTCATACATTGGCAGACTCCCATACTTAAATGCATTAGTGAAAGAGACTTTTCGATTACACCCACCAGCGCCACTTTTGCTCCCTCGTAGAGCCGAAGTGGATCTGGAGATAAATGGTTATACGGTTCCAAAGGGTGCACAAGTGTTAGTTAATGTGTGGGCTATTGGGAGGGATCCCAATTTGTGGGACAATCCAAATGTGTTTTCACCTGAAAGGTTCTTGAGTTCAGAAATTGACTTTAAAGGTCGAAGTTTTGAGTTAACACCATTTGGTGCTGGGCGGAGAATATGTCCTGGCTCGCCACTGGCAATAAGGTTGTTGTTCTTGATGTTGGGTTTGCTTATCAACTGCTTTGATTGGGAGCTTGAAGGTGGAATCAAACCAAAGGATATGAATATGGAAGAAAAGTTTGGTCTTACCTTAGCAAAGGCTCAACCCATGCGAATTGTTCCAATCAAAGCTAACAATGAGTAG 1494 0.4598 MDTVFSFILLFLFTLSFTYTFLRSLHSKRHKLPPGPLGLPIVGNLPQLGQKPHQTMASLAKIHGPIMSLKLGQVTTIVMSSSDTAKAVLQIHDQFLSNRKIPDAMKGANHDQYSLPFIPVSHSWRDLRKICNNLLFSNKTLDASGEVRRKKVLELFNDIRESMIKGEAVDIGRLAFKTAINLLSNTVYSEDLIHSVDKAGEFKELVTNIMKEVGRPNLADCFPVLKVVDPHGIRRRTGSYFWKLLTIFKGLVDQRVKLRKQSDYCTKNDMLDAMLDNADAEEMYKDKIERLSLDLFVAGTDTVTSTVEWAMAELLHNPNVMSKAKAELEQTIGKGNLVEESYIGRLPYLNALVKETFRLHPPAPLLLPRRAEVDLEINGYTVPKGAQVLVNVWAIGRDPNLWDNPNVFSPERFLSSEIDFKGRSFELTPFGAGRRICPGSPLAIRLLFLMLGLLINCFDWELEGGIKPKDMNMEEKFGLTLAKAQPMRIVPIKANNE. 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01648 497 SUPERFAMILY Cytochrome P450 33 492 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01648 497 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 10 493 - -
Seca5g01648 497 CDD CYP76-like 60 491 - -
Seca5g01648 497 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 430 439 IPR017972 GO:0005506|GO:0016705
Seca5g01648 497 FunFam Cytochrome P450 76C4 24 490 - -
Seca5g01648 497 Gene3D Cytochrome P450 19 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01648 497 PRINTS P450 superfamily signature 351 362 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01648 497 PRINTS P450 superfamily signature 428 437 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01648 497 PRINTS P450 superfamily signature 298 315 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01648 497 PRINTS P450 superfamily signature 437 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01648 497 PRINTS E-class P450 group I signature 287 304 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01648 497 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01648 497 PRINTS E-class P450 group I signature 427 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01648 497 PRINTS E-class P450 group I signature 437 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01648 497 PRINTS E-class P450 group I signature 307 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01648 497 PRINTS E-class P450 group I signature 391 415 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01648 497 PRINTS E-class P450 group I signature 350 368 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g01648 497 Pfam Cytochrome P450 33 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01648 Seca-Chr5 50066248 50070584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01648 6 493 Cytochrome P450 AT2G45550 45.691 1.43e-157 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01648 - - lja:Lj2g3v0039250.1 681.404