Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01646 ATGACCACCTCCTTCTCTGACCTGCTTGATTCTCCCACCAACCACAACCTCGGAGGCTCAGAAAGGCCTCATGAGTTGTCGGATCCAACTGGTTCAGGTGTTCCCAAATTCAAATCTGCTCCTCCTCCATCTCTTCCTCTCTCTTCTATTTCTCATCCTACTCCTCCTCCAATTTCTCCTTCTTTCTTTGTTTTCCCTCCTGGCCTGAAACTTGCTGAGCTTCTTGACTCTCCTGTTCTCCTCAACTCTTCTAATAAAACTTTGTCATCTCCAACAACTGGAGCATTTGGCAATCAAGGCTTCAATCACCACAATGTTAAGGAAGAAGACAAAAGCTTCTCAACTTTCTCCTTCCAAACCCAATCACAGCCTTCTCTTTCATCCACAGCTGGATTTCAATCTTCAACAGGCATTGCTCAAACTGTAAGTGACCAATTTCAATACACAAGACTCATTTATGCAAATTCTATGGAAACGGATAGGTTTTCTGGTAGAATGAACATGAGTGTGGTGAAAACTGAAGGCTCTTCTTCTATACAGAGTTTCACCCCTGAGAATGTTGCTAGTGTGCAAAATAACTACAAGAGTGGTTTGCAATCTGATAATAACAATTACCACCCACAATTTCAGACCTTAAACAAAAGGTCAGATGATGGGTACAATTGGAGGAAATATGGGCAAAAACAAGTGAAAGGAAGTGAAAATCCAAGAAGCTACTACAAATGTACATACCCCAATTGCCCAACAAAGAAAAAAGTTGAGAGGTCTTTAGAAGGGCATGTTACTGAGATTGTTTACAAAGGTACTCATAACCATCCAAAGCCTCAGGCTACAAGGAGAAACTCTGGATCATCACTTGCAATTCCTCCTTCAAATCATGTCAGCAATGAAATGCCAGATGCCAGTCATGGTAGTGGACACATGGATTCGGTTGCTACACCTGATAACTCATCAATATCAATGGGAGATGATGATTTTGAACAGAGTTCCCAAAAGAGTAAATCAGGAGGAGAGGACTTTGATGAAGATGAACCTGGTGCCAAAAGATGGAGAATAGAAGGTGAAAATGAGGGCATATCAGCAGCTGGAAGTAGAACAGTGAGAGAACCCAGAGTTGTGGTTCAGACAACCAGTGAAATCGATATTCTAGATGATGGGTACAGATGGAGGAAATATGGGCAGAAAGTAGTAAAGGGAAATCCAAATCCAAGGAGTTACTATAAGTGCACAAACCCAGGATGTCCAGTGAGAAAGCATGTAGAGAGAGCCTCAAATGACTTAAAGGCAGTGATCACAACCTATGAAGGAAAGCACAATCATGATGTCCCTGTGCCACGTGGCAGTGGCTGCCAATCTGTTAACAGACCACTGCCAACCAATGCCACAAACAACACCATGAGTTCAACTCCTATGACTCAATACACTAACAATTCAGTCAACAATTCTCTTCAAAGTTTTAGACCACCAGAAGGGCAAGCACTCTTCACCCCTGAAATGATGCAGAGCCCTGGAAGCTTTGGATTCCCAGGGTTTGGGAATCCAATGGAATCTTACATGAACATGATGAATCAGCAATCTGACAATAATAATGTGTTCTCCTCTAGAGCCAAAGAGGAGCCTGTAGATGACTCGTTTCTTGATTCTTTGCTATGCTAA 1656 0.4239 MTTSFSDLLDSPTNHNLGGSERPHELSDPTGSGVPKFKSAPPPSLPLSSISHPTPPPISPSFFVFPPGLKLAELLDSPVLLNSSNKTLSSPTTGAFGNQGFNHHNVKEEDKSFSTFSFQTQSQPSLSSTAGFQSSTGIAQTVSDQFQYTRLIYANSMETDRFSGRMNMSVVKTEGSSSIQSFTPENVASVQNNYKSGLQSDNNNYHPQFQTLNKRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLEGHVTEIVYKGTHNHPKPQATRRNSGSSLAIPPSNHVSNEMPDASHGSGHMDSVATPDNSSISMGDDDFEQSSQKSKSGGEDFDEDEPGAKRWRIEGENEGISAAGSRTVREPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASNDLKAVITTYEGKHNHDVPVPRGSGCQSVNRPLPTNATNNTMSSTPMTQYTNNSVNNSLQSFRPPEGQALFTPEMMQSPGSFGFPGFGNPMESYMNMMNQQSDNNNVFSSRAKEEPVDDSFLDSLLC. 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01646 551 MobiDBLite consensus disorder prediction 275 299 - -
Seca5g01646 551 ProSiteProfiles WRKY domain profile. 378 443 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g01646 551 MobiDBLite consensus disorder prediction 1 52 - -
Seca5g01646 551 MobiDBLite consensus disorder prediction 1 20 - -
Seca5g01646 551 MobiDBLite consensus disorder prediction 265 362 - -
Seca5g01646 551 FunFam WRKY transcription factor 205 276 - -
Seca5g01646 551 MobiDBLite consensus disorder prediction 327 355 - -
Seca5g01646 551 MobiDBLite consensus disorder prediction 309 326 - -
Seca5g01646 551 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 75 476 IPR044810 GO:0003700
Seca5g01646 551 SUPERFAMILY WRKY DNA-binding domain 375 443 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca5g01646 551 SUPERFAMILY WRKY DNA-binding domain 215 275 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca5g01646 551 Gene3D WRKY domain 370 436 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca5g01646 551 SMART WRKY_cls 383 442 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g01646 551 SMART WRKY_cls 216 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g01646 551 Pfam WRKY DNA -binding domain 384 440 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g01646 551 Pfam WRKY DNA -binding domain 217 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g01646 551 FunFam WRKY transcription factor 33 370 436 - -
Seca5g01646 551 ProSiteProfiles WRKY domain profile. 217 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g01646 551 Gene3D WRKY domain 202 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01646 Seca-Chr5 50017351 50020440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01646 2 443 WRKY Transcription Factor Family AT2G30250 44.000 2.38e-91 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca5g01646 WRKY 1.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01646 K13424 - gmx:100127385 677.937