Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01622 ATGGCACCTTCAAGAGTGATCACTTTTCTTTGTCTCCTTGTTATCCTCATATCTCACACCACCTCCCAGCCAAGCTTTTTGTACCATTACTGCATGAATGATAAAGGCAACTACACTGCAAATAGTGCCTACCAGACAAACCTCAACACTCTTCTATCCACTTTGTCTTCCAACACAGAAATTGATTATGGCTTCTTCAATTTCTCTCAGGGACAAAACTCTGACAAAGTTAATGCAATTGGGATGTGCAGAGGAGATGTTAAGCCAGATGTGTGCCGAAGTTGCCTCAATGATTCCAGAATCCTTCTAACACAGCGTTGTCCAAACCAAAAAGAGGCCATTGGGTGGTATGACAATTGCATGCTACGTTACTCAAACAGCTCAATATTTGGTGTTATGGAACCTGATCCTACATATTTTCTGTGGGACACAAATAATGCAACTGATATGGATCAGTTTAATGAAGTGCTTAGGGGCTTAGTGGATAACCTGAGAAGTAAAGCTGCATCTGGTGATTCCCTTAAAAAGTATGCTGCAGGAAGTGCAGCAGGTCCAAGCTTTCAAACTATATTTGCTCTTCTGCAATGCACACCTGATTTATCAGAGCAACAGTGCAATGATTGCTTGGTCCGGGCTATTGGAGATATCTCAAGTTGTTGTTCTGGCAAGATTAGTGGCAGAATAGGAAAACCAAGCTGCAATCTTAGATTTGATACTTCTCCCTTCTATGACTCTACACTTGATAACTCTCCATCTTCACAAGTGCCTCCTCCACTCACTAATACCACTTCCACAGAAGGAAAGAGCAACACTACACGAATTGTCATCGCAGTAGTTGTGCCAATTGTAGTCATTCTTGTGCTGGTCATCTCTGTTTGCTTTTTCTTAAGAGCAAGAAAGCAAAAGAAAAATATTTACATTGATAGTAAGACATACTTACAAAGCACTGTAGCTGAAGTTGATAATGAAATTGAGCCTACTGAGACATTGCAATTCAACTTTGATACCATACGAATGGCTACAAATAACTTTTCTGATACAAATATGCTAGGACAAGGAGGATTTGGACCTGTATTCAAGGGTAAGCTTCCGAATGGACAAGAAGTTGCTGTCAAAAGGTTATCAACAAATTCAGGACAAGGAGATACAGAATTCAAAAATGAAGTGCAGTTAGTGGCCAAGCTACAGCATCGAAATTTAGTTAGGCTCCTTGGTTTCAGTTTGGAAAGAAAAGAAAGGTTACTAGTCTATGAGTTTGTTCCTAATAAAAGCCTTGATTACTTCATATTTGATCCAATCAAGCAAGCACATTTGGATTGGGAAATGCGGTATAAAATCATAAGAGGCATTGCCAAAGGCCTTCTTTATCTTCATGAAGATTCAAGACTGCGTATTGTTCATCGTGATCTCAAAGCAAGTAATATTCTCTTAGATGCAGAGATGAGCCCAAAGATATCAGATTTTGGAATGGCAAGATTGTTTGCTGTGGATCAAACTCAAGGAAACACTAGTAGAATTGTTGGAACTTATGGATATATGGCACCTGAGTATATAAGGCAAGGACAATTCTCAGTCAAGTCAGATGTCTTTAGTTTTGGTGTATTGGTGCTAGAGATTGTTAATGGTCAGAAAAATAGTGGCTTCCATAATGGAGAGTATGTAGAGGATCTAATAAGCTTTGCCTGGAAAAACTGGAAAGAGGGAAATGCATTAAATCTTGTAGACGGCACATTAAATAAAGGTTCAAGAAATGAAATAATGAGATGCATCCATATTGGTTTACTATGTGTTCAGGAAAATTTAGCTGATAGACCAACCATGGCTTCTATTGTACTCATGCTTGATAGCCACTCTCTCACTCTCCCAGTACCTTCAGAACCTGCATTTTATATACCTAGCAGAGGTTTGTCAGATATTCAATCATGGGAGTATAATTCAGGGTCAACTGAATGA 1953 0.3912 MAPSRVITFLCLLVILISHTTSQPSFLYHYCMNDKGNYTANSAYQTNLNTLLSTLSSNTEIDYGFFNFSQGQNSDKVNAIGMCRGDVKPDVCRSCLNDSRILLTQRCPNQKEAIGWYDNCMLRYSNSSIFGVMEPDPTYFLWDTNNATDMDQFNEVLRGLVDNLRSKAASGDSLKKYAAGSAAGPSFQTIFALLQCTPDLSEQQCNDCLVRAIGDISSCCSGKISGRIGKPSCNLRFDTSPFYDSTLDNSPSSQVPPPLTNTTSTEGKSNTTRIVIAVVVPIVVILVLVISVCFFLRARKQKKNIYIDSKTYLQSTVAEVDNEIEPTETLQFNFDTIRMATNNFSDTNMLGQGGFGPVFKGKLPNGQEVAVKRLSTNSGQGDTEFKNEVQLVAKLQHRNLVRLLGFSLERKERLLVYEFVPNKSLDYFIFDPIKQAHLDWEMRYKIIRGIAKGLLYLHEDSRLRIVHRDLKASNILLDAEMSPKISDFGMARLFAVDQTQGNTSRIVGTYGYMAPEYIRQGQFSVKSDVFSFGVLVLEIVNGQKNSGFHNGEYVEDLISFAWKNWKEGNALNLVDGTLNKGSRNEIMRCIHIGLLCVQENLADRPTMASIVLMLDSHSLTLPVPSEPAFYIPSRGLSDIQSWEYNSGSTE. 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01622 650 Pfam Salt stress response/antifungal 31 126 IPR002902 -
Seca5g01622 650 Pfam Salt stress response/antifungal 145 239 IPR002902 -
Seca5g01622 650 ProSiteProfiles Gnk2-homologous domain profile. 135 242 IPR002902 -
Seca5g01622 650 FunFam Cysteine-rich receptor-like protein kinase 10 307 419 - -
Seca5g01622 650 Gene3D Transferase(Phosphotransferase) domain 1 420 621 - -
Seca5g01622 650 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Seca5g01622 650 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 24 129 - -
Seca5g01622 650 MobiDBLite consensus disorder prediction 246 267 - -
Seca5g01622 650 Gene3D - 137 242 IPR038408 -
Seca5g01622 650 Gene3D - 23 128 IPR038408 -
Seca5g01622 650 SMART serkin_6 344 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01622 650 FunFam Cysteine-rich receptor-like protein kinase 10 137 242 - -
Seca5g01622 650 FunFam cysteine-rich receptor-like protein kinase 10 420 621 - -
Seca5g01622 650 SUPERFAMILY Protein kinase-like (PK-like) 329 642 IPR011009 -
Seca5g01622 650 Pfam Protein tyrosine and serine/threonine kinase 348 612 IPR001245 GO:0004672|GO:0006468
Seca5g01622 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Seca5g01622 650 Gene3D Phosphorylase Kinase; domain 1 306 419 - -
Seca5g01622 650 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 25 635 - -
Seca5g01622 650 ProSiteProfiles Protein kinase domain profile. 344 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01622 650 CDD STKc_IRAK 350 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01622 Seca-Chr5 49564572 49568191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01622 1 633 Receptor kinase-like Gene Family AT4G21410 51.298 0.0 633
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca5g01622 PK_Tyr_Ser-Thr 6.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01622 - - gmx:102662291 1062.37