Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01621 ATGTTTCACTTGAGAAACCATCTCACCCTTTTTCTTCTCTTATCTCTGTTCGGAATCAGATCATTACCCTCCTCAGCATCTCCCGTTTACAACTATAATTACTGTCCAAAAAACACAACCTACGAATCCAGCGAGACATTCCGAACCAATCTCGATGTCTTGTTCTCTTCTCTCGTCTCCACCTCCCAAGCTTACAGTTCCTATTATTCATCCACGGGTCTGGGAACCCAAAACATCGCCAACGGCCAATACATGTGTCGCGGCGATGTCTCCTCTGCCACGTGTCAGGAGTGTGTGACCACAGGAACCAGAGACATAAAACGGCTCTGTCCTAACAAAACAGAGTCCATAATTTGGTACGATGAGTGTCTGGTGGGTTACACAAGCCGCTACTTCGACTACACCGACATCGTTCCTGGAGTGAGTTTGTGGGATGACAAAAACATCTCTGACTCGGATTTGGACAGTTTCAATAGAACGTTGTTTGGTTTGTTAGATAGTTTGGGTGAAGAAGCTGCGAGTTCACAGTCAGGGAAGAAATTTGCCACAGGGGATGCAGAGTTCGCTGCCCCTTTGCGGGTTTATGGGTTGGCGCAGTGCTTGCCGGATATGACGAAGGATCAGTGTGAGAAGTGTTTGCAAAATGCGATTGGAACTCTTACGGCTTGTTGTGGAGGAAAACAGGGTGCTAAGGCTCTGCTTGCGTGGTGTAATATCAGATATCAATTGTATCAGTTTTACAATACCACTGGGACTCCTTCAGTTATTTATGCAGGAAATCAAAAATCTTCATCACGAAAAATTGTCTTGATTGTGGTCTTTGTTGTTATTTCACTAATTCTCTTATGTTGTGTTGGCTATTTCCTACTGAGAAAATCGAGGAAGAATTATAAGACCCTTCTAAGGAAAAATTTTGGGGATGAAAGTGCCACTTTAGAGTCTTTACAATTCAGTTTGACCATAATTGAAGCTGCCACAAAGAAGTTTTCAAGTGAAAACAAAATTGGAGAAGGTGGATTTGGAGAGGTTTATAAGGGTATTCTTTTAGATGGTCAAGAAATAGCTGTTAAAAGACTCTCACAGAAGTCCGGACAAGGTGAAATAGAATTCAAGAATGAGATTGTACTAATAGCCAAACTGCAACATAGAAACCTAGTAACTTTGCTAGGATTTTGCTTGGAAGAACAAGAGAAAATGCTTATTTATGAATTTGTGCCCAATAAGAGCCTTGATTACTTTTTATTTGATCCCCACAAGAGTAGACTATTGAATTGGTCTGAGCGTTACAGAATTATTGAAGGAATTGCAAGAGGAATTCTTTATTTGCATGAGCATTCACGATTGAAAGTTATACATCGTGATCTTAAACCTAGTAATGTACTGTTAGATGAAAGCATGAATCCAAAAATCTCCGACTTTGGTGTTGCAAGGATTGTTGCTATAGATCAAGATCGAGGAAATACAAATAGAATTGTGGGGACATTTGGGTATATGTCTCCAGAGTATGCAATGCATGGACAGTTTTCAGAAAAGTCAGATGTATATAGTTTTGGTGTCATAGTTTTGGAGACAATTAGTGCAAAAAAGAATGCTCGTTCTTTGTTATCTGATGATGATGATGACCTCTTAAGTTATGCTTGGAGACAATGGAGAGATCAAACACCATTAAAAATATTAGATGAAGACATACAAGAATCTTGCAATCATAGTGAAGTCATTAAGTGCATCCAAATTGGTTTATTGTGTGTGCAAGAGAAGGTAGATAATAGACCTACCATGGCAAAAGTTGTTTCATATCTTAGTAGCCCTTTATCTGAGTTGCCGTTTCCTGGAGAACCAACGAATTCTAAGCATAATGGAATAGTTCAAAAGATGGTAGGAGGCGAATCGAGTTCTGGTTCTACATTATCAATGAATGAAATGTCTGTGACTATATCTATTCCTCGATAG 1950 0.3969 MFHLRNHLTLFLLLSLFGIRSLPSSASPVYNYNYCPKNTTYESSETFRTNLDVLFSSLVSTSQAYSSYYSSTGLGTQNIANGQYMCRGDVSSATCQECVTTGTRDIKRLCPNKTESIIWYDECLVGYTSRYFDYTDIVPGVSLWDDKNISDSDLDSFNRTLFGLLDSLGEEAASSQSGKKFATGDAEFAAPLRVYGLAQCLPDMTKDQCEKCLQNAIGTLTACCGGKQGAKALLAWCNIRYQLYQFYNTTGTPSVIYAGNQKSSSRKIVLIVVFVVISLILLCCVGYFLLRKSRKNYKTLLRKNFGDESATLESLQFSLTIIEAATKKFSSENKIGEGGFGEVYKGILLDGQEIAVKRLSQKSGQGEIEFKNEIVLIAKLQHRNLVTLLGFCLEEQEKMLIYEFVPNKSLDYFLFDPHKSRLLNWSERYRIIEGIARGILYLHEHSRLKVIHRDLKPSNVLLDESMNPKISDFGVARIVAIDQDRGNTNRIVGTFGYMSPEYAMHGQFSEKSDVYSFGVIVLETISAKKNARSLLSDDDDDLLSYAWRQWRDQTPLKILDEDIQESCNHSEVIKCIQIGLLCVQEKVDNRPTMAKVVSYLSSPLSELPFPGEPTNSKHNGIVQKMVGGESSSGSTLSMNEMSVTISIPR. 650
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01621 649 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Seca5g01621 649 FunFam Cysteine-rich receptor-like protein kinase 10 139 246 - -
Seca5g01621 649 FunFam cysteine-rich receptor-like protein kinase 10 405 607 - -
Seca5g01621 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Seca5g01621 649 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 646 - -
Seca5g01621 649 Gene3D Transferase(Phosphotransferase) domain 1 405 607 - -
Seca5g01621 649 ProSiteProfiles Gnk2-homologous domain profile. 137 246 IPR002902 -
Seca5g01621 649 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Seca5g01621 649 ProSiteProfiles Protein kinase domain profile. 329 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01621 649 CDD STKc_IRAK 335 600 - -
Seca5g01621 649 Gene3D - 141 246 IPR038408 -
Seca5g01621 649 Gene3D - 28 132 IPR038408 -
Seca5g01621 649 SUPERFAMILY Protein kinase-like (PK-like) 313 612 IPR011009 -
Seca5g01621 649 Gene3D Phosphorylase Kinase; domain 1 292 404 - -
Seca5g01621 649 Pfam Protein tyrosine and serine/threonine kinase 332 600 IPR001245 GO:0004672|GO:0006468
Seca5g01621 649 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 290 404 - -
Seca5g01621 649 SMART serkin_6 329 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01621 649 Pfam Salt stress response/antifungal 154 243 IPR002902 -
Seca5g01621 649 Pfam Salt stress response/antifungal 35 128 IPR002902 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca5g01621 Seca-Chr5 49537732 49542202 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01621 4 649 Receptor kinase-like Gene Family AT4G05200 43.172 0.0 563
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca5g01621 Pkinase 5.3e-47 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01621 - - gsj:114402923 876.7