LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g01621	ATGTTTCACTTGAGAAACCATCTCACCCTTTTTCTTCTCTTATCTCTGTTCGGAATCAGATCATTACCCTCCTCAGCATCTCCCGTTTACAACTATAATTACTGTCCAAAAAACACAACCTACGAATCCAGCGAGACATTCCGAACCAATCTCGATGTCTTGTTCTCTTCTCTCGTCTCCACCTCCCAAGCTTACAGTTCCTATTATTCATCCACGGGTCTGGGAACCCAAAACATCGCCAACGGCCAATACATGTGTCGCGGCGATGTCTCCTCTGCCACGTGTCAGGAGTGTGTGACCACAGGAACCAGAGACATAAAACGGCTCTGTCCTAACAAAACAGAGTCCATAATTTGGTACGATGAGTGTCTGGTGGGTTACACAAGCCGCTACTTCGACTACACCGACATCGTTCCTGGAGTGAGTTTGTGGGATGACAAAAACATCTCTGACTCGGATTTGGACAGTTTCAATAGAACGTTGTTTGGTTTGTTAGATAGTTTGGGTGAAGAAGCTGCGAGTTCACAGTCAGGGAAGAAATTTGCCACAGGGGATGCAGAGTTCGCTGCCCCTTTGCGGGTTTATGGGTTGGCGCAGTGCTTGCCGGATATGACGAAGGATCAGTGTGAGAAGTGTTTGCAAAATGCGATTGGAACTCTTACGGCTTGTTGTGGAGGAAAACAGGGTGCTAAGGCTCTGCTTGCGTGGTGTAATATCAGATATCAATTGTATCAGTTTTACAATACCACTGGGACTCCTTCAGTTATTTATGCAGGAAATCAAAAATCTTCATCACGAAAAATTGTCTTGATTGTGGTCTTTGTTGTTATTTCACTAATTCTCTTATGTTGTGTTGGCTATTTCCTACTGAGAAAATCGAGGAAGAATTATAAGACCCTTCTAAGGAAAAATTTTGGGGATGAAAGTGCCACTTTAGAGTCTTTACAATTCAGTTTGACCATAATTGAAGCTGCCACAAAGAAGTTTTCAAGTGAAAACAAAATTGGAGAAGGTGGATTTGGAGAGGTTTATAAGGGTATTCTTTTAGATGGTCAAGAAATAGCTGTTAAAAGACTCTCACAGAAGTCCGGACAAGGTGAAATAGAATTCAAGAATGAGATTGTACTAATAGCCAAACTGCAACATAGAAACCTAGTAACTTTGCTAGGATTTTGCTTGGAAGAACAAGAGAAAATGCTTATTTATGAATTTGTGCCCAATAAGAGCCTTGATTACTTTTTATTTGATCCCCACAAGAGTAGACTATTGAATTGGTCTGAGCGTTACAGAATTATTGAAGGAATTGCAAGAGGAATTCTTTATTTGCATGAGCATTCACGATTGAAAGTTATACATCGTGATCTTAAACCTAGTAATGTACTGTTAGATGAAAGCATGAATCCAAAAATCTCCGACTTTGGTGTTGCAAGGATTGTTGCTATAGATCAAGATCGAGGAAATACAAATAGAATTGTGGGGACATTTGGGTATATGTCTCCAGAGTATGCAATGCATGGACAGTTTTCAGAAAAGTCAGATGTATATAGTTTTGGTGTCATAGTTTTGGAGACAATTAGTGCAAAAAAGAATGCTCGTTCTTTGTTATCTGATGATGATGATGACCTCTTAAGTTATGCTTGGAGACAATGGAGAGATCAAACACCATTAAAAATATTAGATGAAGACATACAAGAATCTTGCAATCATAGTGAAGTCATTAAGTGCATCCAAATTGGTTTATTGTGTGTGCAAGAGAAGGTAGATAATAGACCTACCATGGCAAAAGTTGTTTCATATCTTAGTAGCCCTTTATCTGAGTTGCCGTTTCCTGGAGAACCAACGAATTCTAAGCATAATGGAATAGTTCAAAAGATGGTAGGAGGCGAATCGAGTTCTGGTTCTACATTATCAATGAATGAAATGTCTGTGACTATATCTATTCCTCGATAG	1950	0.3969	MFHLRNHLTLFLLLSLFGIRSLPSSASPVYNYNYCPKNTTYESSETFRTNLDVLFSSLVSTSQAYSSYYSSTGLGTQNIANGQYMCRGDVSSATCQECVTTGTRDIKRLCPNKTESIIWYDECLVGYTSRYFDYTDIVPGVSLWDDKNISDSDLDSFNRTLFGLLDSLGEEAASSQSGKKFATGDAEFAAPLRVYGLAQCLPDMTKDQCEKCLQNAIGTLTACCGGKQGAKALLAWCNIRYQLYQFYNTTGTPSVIYAGNQKSSSRKIVLIVVFVVISLILLCCVGYFLLRKSRKNYKTLLRKNFGDESATLESLQFSLTIIEAATKKFSSENKIGEGGFGEVYKGILLDGQEIAVKRLSQKSGQGEIEFKNEIVLIAKLQHRNLVTLLGFCLEEQEKMLIYEFVPNKSLDYFLFDPHKSRLLNWSERYRIIEGIARGILYLHEHSRLKVIHRDLKPSNVLLDESMNPKISDFGVARIVAIDQDRGNTNRIVGTFGYMSPEYAMHGQFSEKSDVYSFGVIVLETISAKKNARSLLSDDDDDLLSYAWRQWRDQTPLKILDEDIQESCNHSEVIKCIQIGLLCVQEKVDNRPTMAKVVSYLSSPLSELPFPGEPTNSKHNGIVQKMVGGESSSGSTLSMNEMSVTISIPR.	650

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g01621	649	ProSiteProfiles	Gnk2-homologous domain profile.	29	132	IPR002902	-
	Seca5g01621	649	FunFam	Cysteine-rich receptor-like protein kinase 10	139	246	-	-
	Seca5g01621	649	FunFam	cysteine-rich receptor-like protein kinase 10	405	607	-	-
	Seca5g01621	649	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	450	462	IPR008271	GO:0004672\|GO:0006468
	Seca5g01621	649	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	21	646	-	-
	Seca5g01621	649	Gene3D	Transferase(Phosphotransferase) domain 1	405	607	-	-
	Seca5g01621	649	ProSiteProfiles	Gnk2-homologous domain profile.	137	246	IPR002902	-
	Seca5g01621	649	ProSitePatterns	Protein kinases ATP-binding region signature.	335	357	IPR017441	GO:0005524
	Seca5g01621	649	ProSiteProfiles	Protein kinase domain profile.	329	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca5g01621	649	CDD	STKc_IRAK	335	600	-	-
	Seca5g01621	649	Gene3D	-	141	246	IPR038408	-
	Seca5g01621	649	Gene3D	-	28	132	IPR038408	-
	Seca5g01621	649	SUPERFAMILY	Protein kinase-like (PK-like)	313	612	IPR011009	-
	Seca5g01621	649	Gene3D	Phosphorylase Kinase; domain 1	292	404	-	-
	Seca5g01621	649	Pfam	Protein tyrosine and serine/threonine kinase	332	600	IPR001245	GO:0004672\|GO:0006468
	Seca5g01621	649	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	290	404	-	-
	Seca5g01621	649	SMART	serkin_6	329	600	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca5g01621	649	Pfam	Salt stress response/antifungal	154	243	IPR002902	-
	Seca5g01621	649	Pfam	Salt stress response/antifungal	35	128	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g01621	Seca-Chr5	49537732	49542202	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g01621	4	649	Receptor kinase-like Gene Family	AT4G05200	43.172	0.0	563

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Seca5g01621		Pkinase	5.3e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g01621	-		-	gsj:114402923	876.7