Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01618 ATGAACATGGAATGCTACTTAGCCACCAAATGTCACGTCTTGCTTTATCTGGCGTTCCATTTTTCCCTTCTCAAATATTCCTATTCCTCAGAGGCCTTACATCTCTACCGTTGCTCATCCACCAAAACATTCACAGCCAATAGCCCTTTCCAGTTCAACCTGGACACTCTTCTAGCATCTCTCTCTTCCGTCGTCACTAATAATAAGGAGTTCAACTTCTACAACACCACAGCCGGTGGCAGAAACTCCCTTGACACCGTCTACGGCCTTTACATGTGCCGTGGCGACGTACCCTACGAGGTGTGTCGAGATTGCGTAGTAAAAGGAACCCCAAAACTAGCCTCAGTGTGCGAGTTCGTGAAAGAAGGTATAATATGGTATAACGAGTGCTTCATTCGTTATTCCAATCGCTCTTTCTTCTCCTCAATAGATGAACAGCCTAGAATCGGCATTTTTAACACAATGAACATAACAACCACAAAAAGTAGCAACAACACAGGCTTCACTTGGACACTGGCAAACACGTTGAGCCAAGTGGTGTCCGAGGCAGCCAATAGTAGCAACAAGTTTGCAACGAAAAAAGTGGCGATTTCGATTGCTGAGTCTGACGCGCTTTACAGTCTTGCTGAATGCACGCCGGATCTGTCGCCACAAGATTGCGACACGTGTCTGCGTGATGCAATGAGTGATGTGCCGTGGTGTTGTATGGGAAAGGCTGGGGGAAGAGTTGTGTATCCTAGCTGCTCACTAAGGTTTGAATTGTACCAGTTTTACTGGGATACAACGGAAACTTATGTGGCAAAGTCGCCTCTTCAAGGCACCCCTTTTAGCTCAGGAGTCACAGAAAATGGAAAAAGAAGTTCGCGAACAGTTATTTTTGTTGTTGCCCCTTTTGTTGTTTCGGTGACACTCTTTGCTTTTTGCTCCTACTATTTGCTAAGGAGAAAGGCAAGAAAAAGCAGCTGTGAGACTCTTCTAAAAGAAAACTTTGGTCGTGAAATTTCAACTTTGGAAGGGTTGCAATTCAATTTGGCTATAATTGAAGCATCAACCAACAATTTTTCACTTGAGAATAGAATCGGTAAAGGTGGATTTGGAGAAGTTTACAAGGGCATTCTTTCTGATGGACGACATATAGCTGTAAAAAGACTTTCAACAAGCTCTAAGCAAGGTTCAATTGAATTCAAAAATGAGATTTTACTGATAGCCAAATTACAACATAGAAATCTTGTGGCATTGATAGGTTTTTGCCTAGACGAACAAGAGAAGATTCTTATTTATGAATACATGCAAAATGGGAGCCTCGATAAATTTTTATTTGATACTCAACAATCGAAGTTAAGTTGGTTTGAGCGTTACAAAATTATAGGCGGAATTTCTCTTGGGATTCTTTATTTACATGAATATTCTCGGCTTAAAGTTATACATCGAGATCTTAAACCTAGTAATGTTTTACTAGATGAAAATATGAATCCAAAGATATCGGATTTTGGCATGGCTAGAATTGTTGAAATAGAACAAGATCGTGGAAAAACTAATAGAATTGTTGGAACATATGGTTATATGTCTCCAGAATATGCAATGTTTGGACATTTTTCTGAAAAGACGGATGTTTTTAGTTTTGGAGTCATGGTTCTAGAAATTATTACTGGACAAAGAAATGTGAATTCTTATGACTCAGACCATGTTGCAGATGGCCTCATGAGTTATGTTTGGAAACAATGGAATGATCAAACACCACTAAACATATTGGACCCAAATATGAAAGAAAATTATTCTCAAGTTGAAATTATTAAGTGTATTCATATTGGTTTATTATGTGTTCAAGAAAATCAAACCGCTAGACCAACAATGTCAACAGTTGTCTCATATCTTAAGAGTCATTCCCTTGAATTGCCATCTCCACAAGAACCGGCATTTTTCTTGCATGGTAGAATGGATCAAAGAGTTGCTACACATCAACCATCAAGTTTTAGTCAACTTGCCAATTACGCCATGCCATTGTCTGTCAATGAGATGTCTATGAGTAACTTTTATCCAAGATAG 2046 0.3944 MNMECYLATKCHVLLYLAFHFSLLKYSYSSEALHLYRCSSTKTFTANSPFQFNLDTLLASLSSVVTNNKEFNFYNTTAGGRNSLDTVYGLYMCRGDVPYEVCRDCVVKGTPKLASVCEFVKEGIIWYNECFIRYSNRSFFSSIDEQPRIGIFNTMNITTTKSSNNTGFTWTLANTLSQVVSEAANSSNKFATKKVAISIAESDALYSLAECTPDLSPQDCDTCLRDAMSDVPWCCMGKAGGRVVYPSCSLRFELYQFYWDTTETYVAKSPLQGTPFSSGVTENGKRSSRTVIFVVAPFVVSVTLFAFCSYYLLRRKARKSSCETLLKENFGREISTLEGLQFNLAIIEASTNNFSLENRIGKGGFGEVYKGILSDGRHIAVKRLSTSSKQGSIEFKNEILLIAKLQHRNLVALIGFCLDEQEKILIYEYMQNGSLDKFLFDTQQSKLSWFERYKIIGGISLGILYLHEYSRLKVIHRDLKPSNVLLDENMNPKISDFGMARIVEIEQDRGKTNRIVGTYGYMSPEYAMFGHFSEKTDVFSFGVMVLEIITGQRNVNSYDSDHVADGLMSYVWKQWNDQTPLNILDPNMKENYSQVEIIKCIHIGLLCVQENQTARPTMSTVVSYLKSHSLELPSPQEPAFFLHGRMDQRVATHQPSSFSQLANYAMPLSVNEMSMSNFYPR. 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01618 681 ProSiteProfiles Gnk2-homologous domain profile. 32 139 IPR002902 -
Seca5g01618 681 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Seca5g01618 681 Gene3D Phosphorylase Kinase; domain 1 316 429 - -
Seca5g01618 681 SUPERFAMILY Protein kinase-like (PK-like) 341 657 IPR011009 -
Seca5g01618 681 FunFam Cysteine-rich receptor-like protein kinase 25 151 257 - -
Seca5g01618 681 ProSiteProfiles Gnk2-homologous domain profile. 150 257 IPR002902 -
Seca5g01618 681 Gene3D - 31 139 IPR038408 -
Seca5g01618 681 Gene3D - 151 257 IPR038408 -
Seca5g01618 681 ProSiteProfiles Protein kinase domain profile. 354 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01618 681 Pfam Protein kinase domain 355 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01618 681 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 31 139 - -
Seca5g01618 681 Pfam Salt stress response/antifungal 38 136 IPR002902 -
Seca5g01618 681 Pfam Salt stress response/antifungal 160 255 IPR002902 -
Seca5g01618 681 CDD STKc_IRAK 360 626 - -
Seca5g01618 681 Gene3D Transferase(Phosphotransferase) domain 1 430 634 - -
Seca5g01618 681 SMART serkin_6 354 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01618 681 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 34 677 - -
Seca5g01618 681 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 314 429 - -
Seca5g01618 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Seca5g01618 681 FunFam cysteine-rich receptor-like protein kinase 10 430 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01618 Seca-Chr5 49413282 49419086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01618 10 681 Receptor kinase-like Gene Family AT4G05200 45.735 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca5g01618 Pkinase 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01618 - - gmx:100792162 749.969