Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01616 ATGCTTGGGGGCTTCCCACTTCAGGAAATTCACATATCTATGACAAATGGTCCAAATATCACAACCTCCACATTGGTGATTCACTCTGTGTTTCTATACCCACCAAGTCAAGATTCAGTGATTCAAGTAACAGAGGAGTCCTACAAGAGCTGCAACCTTAAAGATCCGATCTTGTACATGAACAATGGGAATTCATTGTTCAACATTACATCAGAGGGGGATTTCTACTTCACTAGTGGTGAAGCTGGCCATTGTCAAAAGAATCAGAAGCTTCATATATTAGTAGGTAATGGCACGGGAAATGTGAATAATGCATATGCTCCAACTTCATTGCCTGCATACGCACCCTCCTATCCAACTGTTTTTGGTACCATTCCAGTTTCTCCTTCTTCCTCACATCAGTTATATTCAAATTTTCCACTGGTCATTGTTGGATTCTTGATGTGTATACTGATCTCTACCGTAATGTGA 471 0.4055 MLGGFPLQEIHISMTNGPNITTSTLVIHSVFLYPPSQDSVIQVTEESYKSCNLKDPILYMNNGNSLFNITSEGDFYFTSGEAGHCQKNQKLHILVGNGTGNVNNAYAPTSLPAYAPSYPTVFGTIPVSPSSSHQLYSNFPLVIVGFLMCILISTVM. 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01616 156 Gene3D - 15 95 IPR008972 -
Seca5g01616 156 PANTHER BLUE COPPER PROTEIN 29 108 IPR039391 GO:0009055
Seca5g01616 156 Pfam Plastocyanin-like domain 30 88 IPR003245 GO:0009055
Seca5g01616 156 SUPERFAMILY Cupredoxins 30 95 IPR008972 -
Seca5g01616 156 ProSiteProfiles Phytocyanin domain profile. 1 97 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01616 Seca-Chr5 49148624 49149850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01616 30 127 Phytocyanin Superfamily AT1G64640 58.163 5.13e-33 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01616 - - gmx:100783186 192.586