Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01615 ATGAAGCAGTATGAGTGTTTGACTCATGATTCTTACAACGCTACTGCTATTTTTGTTCCCTTTTATGTTGGTTTTGCTTTCATACTTGTTGTCGCTTTTAGAATGGAACAATTAGATTGGAATAGCTCTAGCAGCCTAGCTAAATCATTGGGAAAAGTAGTATCAATTGATGGTGCTTTTATTCTGACATTGTATAAGGGCCATGCACTTTTGATGGGACTATCGCCTGAAAACTCATCTCAGCAGTCAGTTTCCTCACAAAATTCTAATTGGATACTCGGAGAATTATTTCTTGTTGTTAACTATGTGATGGCTGTTGATGTTCTCCTTTTGGAAGATGTACCTAAGTATGGTGTTGGACTGGAAGGTGTTGATAATCCTAGTGATGTTACAGGAAATCCAACTTCATGTGCTGAAATGGCTACATATCTATTGTTGGGTCTCCTCCGTAAGCAAAATGAAATGCATATTTTCATACAACAGAAGAAGCTTGGAAGTAATGAGAAAATTGTGTTGGTAGGATCAGTGTTAGCTATTGATCCTGGTGCAGCAATTGTGTTTCTTGATTTCATGGTTGATGAATTGTTGGAGGTGTTTCGCGTTTTGAATTGTCAAAATTATTTCAAATATGTGGAGGGTCACAATGTGATGGTGTCGTTCTTGTGCAATGTTGGGAGAGTGAAAGAAGGGATGAAGCAGTATGAGTGTTTGACTCATGATTCTTACAACGCTACTGCTATTTTTGTTCCCTTTTATGCTGGTTTTGCTTTCATACTTGCTATCGCTTTTAGAATGGAACAATTAGATTGGAATAGCTCTAGCAGCCTAGCTAAATCATTGGGAACAGTAGTATCAATTGATGGTGCTTTTATTCTGACATTGTATAAAGGCCATGCACTTTTGATGGGACTATCACCTGAAAACTCATCTCAGCAGTCGGTTTCCTCACAAAATTCCAATTGGATACTCGGAGAATTATTTCTTGTTGTTAACTATGTGATGGTTGTTGCATTTCAACTTGGTAATTGTGTGATCCCAGTTTCTCATGAATATACAACAAAGTATTTGCAGAATTATTCATTTACCAAGGTTGATGTTCTCCTTTTGGAAGATGTACCTAAGCATGGTGCTGGGCTGGAAGGTGTTGATATTCCTAGTGATGTTACAGGAAATCCAACTTCATGTGCTGAAATGGCTACATATCTAATGTTGGGTCTCCTCTGTAAGCAAAATGAAATGCAGATTTTCATACAACAGAAGAAGCTTGGAAGTAATGAGAAAATTGTGTTGGTAGGATCAGTGTCAGCTATTGATCCTGGTGCAGCAATTGTGTTTCTTACTTTCATGGTTGATGAATTGTTGGAGGTGTTTCGCGTTTTGAATTGTCAAAATTATTTCAAATATGTGGAGGGTTACAATGTGATGGTGTCGTTCTTGTGCAATGCTGGGAGAGTTAAAGAAGGGTATGCTGTTCTCCAGGAGATGAAGAAGAAAGGGATCTGCCCCAATGTTGAGTCTTATAATTATATCATGGAAGCATGTTGCAAGGAGGATATGTTGCGCCCTGTGAGGAAGCTGTGGGATGAGATGTTTTCGAGTGGCTGTTGTGGGAACTTGACAACTTACAATATTATAATAGGGAAGTTTTCTGAAGAGGGACAAATTGAAGAGGCTCTTGCCAACCTTTATGAAGACCAGTTTTATTTTGTTGAGCTTCTCTCTTGTTTTCTAGTTGGTATTGGTTGA 1746 0.3837 MKQYECLTHDSYNATAIFVPFYVGFAFILVVAFRMEQLDWNSSSSLAKSLGKVVSIDGAFILTLYKGHALLMGLSPENSSQQSVSSQNSNWILGELFLVVNYVMAVDVLLLEDVPKYGVGLEGVDNPSDVTGNPTSCAEMATYLLLGLLRKQNEMHIFIQQKKLGSNEKIVLVGSVLAIDPGAAIVFLDFMVDELLEVFRVLNCQNYFKYVEGHNVMVSFLCNVGRVKEGMKQYECLTHDSYNATAIFVPFYAGFAFILAIAFRMEQLDWNSSSSLAKSLGTVVSIDGAFILTLYKGHALLMGLSPENSSQQSVSSQNSNWILGELFLVVNYVMVVAFQLGNCVIPVSHEYTTKYLQNYSFTKVDVLLLEDVPKHGAGLEGVDIPSDVTGNPTSCAEMATYLMLGLLCKQNEMQIFIQQKKLGSNEKIVLVGSVSAIDPGAAIVFLTFMVDELLEVFRVLNCQNYFKYVEGYNVMVSFLCNAGRVKEGYAVLQEMKKKGICPNVESYNYIMEACCKEDMLRPVRKLWDEMFSSGCCGNLTTYNIIIGKFSEEGQIEEALANLYEDQFYFVELLSCFLVGIG. 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01615 581 Pfam PPR repeat 541 559 IPR002885 -
Seca5g01615 581 NCBIfam pentatricopeptide repeat 506 538 IPR002885 -
Seca5g01615 581 NCBIfam pentatricopeptide repeat 472 504 IPR002885 -
Seca5g01615 581 Gene3D Tetratricopeptide repeat domain 448 570 IPR011990 GO:0005515
Seca5g01615 581 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 503 537 IPR002885 -
Seca5g01615 581 PANTHER WAT1-RELATED PROTEIN 233 342 IPR030184 GO:0016020|GO:0022857
Seca5g01615 581 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
Seca5g01615 581 Pfam PPR repeat family 470 516 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01615 Seca-Chr5 49144212 49147463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01615 254 335 Nodulin-like Gene Family AT3G28050 52.439 8.60e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01615 - - gmx:100813184 209.534