Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01593 ATGGATGAATTTTGTGAAGGTTCATGTATTAACCTTGATGACGATAATGTAGATATTAATGATACTGGTGCTGAATTTGATGTAAACCGTAGTGAAGATGAAAATGATTTGGGTGGTCCTAGTGGGGAGGAAGAGTTAGGTAGGATGGATAATAGCAGTAAAAGAATGGAAGATTTGACTCCTGTTGATATTCGAAACATGGAGTTTGCTAGTGAAGATCATGGGGAGATATTTTATAGGGCATATGCAAAGCGTCATGGATTTGTTGTTAGAAAGGATGAAATTGATCGGGACATTAAGGGCAATGTTATTATGCGTCAGTTCGTTTGCAACAAAGAGGGTAGTAGGAACAAAAAACATTTGATGAGGGTGGATAGGAAAAAAGAACATAGGCCATTAACGCGTCTGGATTGTCAAGCTAAGATACGAGTTCGCTTAGATTATAAGACAGATAAATGGAAAGTGGTTTCTTTCGTGGAGACCCACAATCATGAGCTTACCCCTTCTACTTTTGTGCACTTACTACCTAGTAATAGAGGGTTGAATAATGCTGATAAAGCCCAAGAAGTGAATGTGAAAATTAGTGGTAGACATAAAGGGAAGGAGAAGGACTGCACCCAAAATGTGGAAGTGAAAGTGTGTGGTAGTCATGAAGGGCAGAAAAAACAATTCTCACAAGATGTGGAAGTGAAAGTTAGTGGTATTCATGAAGGGAAGGAGAAGGAATGCACCCAAAATGTTATTTTGAATCATAATGTGGGTAATAAAGGGAAGGAAAATGAGGTTCATGTCTTGCCACAAAATTCAGTCCAAAACTCTGTAAGTCCAAAACAGGAGAAATTTCGTCCTATTGCTCCTTCTTTTATGCGCCCCTTTCACAGCTCTATATTTGGTCCTGGTATGCCAAGCCAAACGATGCCTGTGCCCCATCCTCAGTATGGTTATGTTCCTATGTACCCATCCGGTTATCCCATGGTTTACCCTAATATGGTTATGCAAAACCTCCAGAAAGCTCCCACTGGTACTTCATTGGATCATTTGCGTGGTGTAGTCAATAATAATGGAAAAGGAGAAGGAAGCAAACCAGCTGAGCATATGAAAAACATGGATTGA 1113 0.398 MDEFCEGSCINLDDDNVDINDTGAEFDVNRSEDENDLGGPSGEEELGRMDNSSKRMEDLTPVDIRNMEFASEDHGEIFYRAYAKRHGFVVRKDEIDRDIKGNVIMRQFVCNKEGSRNKKHLMRVDRKKEHRPLTRLDCQAKIRVRLDYKTDKWKVVSFVETHNHELTPSTFVHLLPSNRGLNNADKAQEVNVKISGRHKGKEKDCTQNVEVKVCGSHEGQKKQFSQDVEVKVSGIHEGKEKECTQNVILNHNVGNKGKENEVHVLPQNSVQNSVSPKQEKFRPIAPSFMRPFHSSIFGPGMPSQTMPVPHPQYGYVPMYPSGYPMVYPNMVMQNLQKAPTGTSLDHLRGVVNNNGKGEGSKPAEHMKNMD. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01593 370 Pfam FAR1 DNA-binding domain 78 167 IPR004330 -
Seca5g01593 370 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 13 238 - -
Seca5g01593 370 MobiDBLite consensus disorder prediction 27 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01593 Seca-Chr5 47506593 47510502 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g01593 FAR1 2.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01593 - - ccaj:109792835 172.17