Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01588 ATGAAAGGGCAGAGCGGAGAAATTATTGGCGTTTCCTCAAACGCGATTCAGCAGCGTCTCCAATTCATTGTGCAGAACCGTCCTGAATGGTGGGTGTACGCAATCTTTTGGCAACCTTCCAAAGATGGTGTTAAATTAGAATGGGGCGATGGCTACTTTCGTGGTGGAAAGACCAAAGTAGAAAAGAAAAGCACATCAGAGAGGAGTGTGCATGACATTGAGTGGTTCTACACGGTGTCGCAAACTCGCTCATTTGGCTCTGTGGATGGTGTCATTGGGCATGCGTTTAGTTCAGGAGCAGATGTTTGGTTAAGCGGAATGAACGAGTTTCAATTAAACGACTGTGATCGAGTTAGAGAAGCTTGTAATCATGGGATCCACACTTTAGTCTGCGTTTCAACAATAACCGGCCGGTGTCGTTGA 423 0.461 MKGQSGEIIGVSSNAIQQRLQFIVQNRPEWWVYAIFWQPSKDGVKLEWGDGYFRGGKTKVEKKSTSERSVHDIEWFYTVSQTRSFGSVDGVIGHAFSSGADVWLSGMNEFQLNDCDRVREACNHGIHTLVCVSTITGRCR. 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01588 140 PANTHER MYC 12 137 IPR045084 GO:0003700|GO:0006355
Seca5g01588 140 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 17 137 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01588 Seca-Chr5 47417170 47417592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01588 10 137 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 31.138 4.50e-25 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01588 - - gmx:100777730 185.267