Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01587 ATGGCTAAATCAGTGTTTGAAAATAACAACCAAGATCATCAAAATCCACTTTACAGGCCCAATGTCCCTTTTTTGGGCCTTCCAAAGACAGAGAGTAACAGAGACAAAAACAAGCTCAAGCAGAAACAAAGAAGGGAGTTATTAGATGATGAAGCTTCCTCTGACACGTCAGATACTGAGGCTCCTTTTGCCTTTGCTGAAACGAACAATAATGTTCCAAGGAGAGCGAATCAATTGCCTCAGAATCACGTCGAGGCTGAGAGGCAGAGACGAGAGAAATTAAATCAAAGATTCTATGCTCTCCGTTCTGCTGTTCCAAACGTGTCTAGAATGGACAAAGCATCTTTACTTTCCGACGCCGTTGCGTACATCAATGAACTCAAGGCCAAAATTAATGAGCTTGAAAACAAATCAGAGAGCCATTGCGACAGATCCAAGCAAGAAACTGTTGTAAAAACCATGCATTGCTCAAGCTCTGCTACAACAACTACAATGGGAGTTGAAGTGAAGATCTTTGGGACAGAGGCAATTATAAGGGTGCAGAGCCTAAACGTGAATCACCCTCCTGCAAGGTTAATGGATGCTCTAAGAGATCTCCAGTTGCCAATTCTCCATGCCACCATGTCAAACATCAAAGAGATGATGCTGCAAGACGTCGTCGTTCGGGTTCCTCATGACCTCATGACTGAAGAAGCCATGAAGAATGCCATTATTCAAAGACTTTGA 726 0.4298 MAKSVFENNNQDHQNPLYRPNVPFLGLPKTESNRDKNKLKQKQRRELLDDEASSDTSDTEAPFAFAETNNNVPRRANQLPQNHVEAERQRREKLNQRFYALRSAVPNVSRMDKASLLSDAVAYINELKAKINELENKSESHCDRSKQETVVKTMHCSSSATTTTMGVEVKIFGTEAIIRVQSLNVNHPPARLMDALRDLQLPILHATMSNIKEMMLQDVVVRVPHDLMTEEAMKNAIIQRL. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01587 241 MobiDBLite consensus disorder prediction 1 69 - -
Seca5g01587 241 Gene3D - 69 142 IPR036638 GO:0046983
Seca5g01587 241 MobiDBLite consensus disorder prediction 31 52 - -
Seca5g01587 241 MobiDBLite consensus disorder prediction 1 17 - -
Seca5g01587 241 PANTHER MYC 2 240 IPR045084 GO:0003700|GO:0006355
Seca5g01587 241 SMART finulus 84 133 IPR011598 GO:0046983
Seca5g01587 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 78 127 IPR011598 GO:0046983
Seca5g01587 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 140 IPR036638 GO:0046983
Seca5g01587 241 Pfam Helix-loop-helix DNA-binding domain 81 127 IPR011598 GO:0046983
Seca5g01587 241 Coils Coil 117 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01587 Seca-Chr5 47416398 47417123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01587 73 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 46.667 1.14e-46 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca5g01587 HLH 2.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01587 - K13422 pvu:PHAVU_004G090300g 243.432