Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01563 ATGGAAGCAAAATCTGAAAAAAGAGATGGCTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAATCTATTCCCAGTACTAATAAGAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGAGAAAGAACTGGGATCCTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGTTGAGGAAAGGGTTGTTGAAAGTAGAGACAGAACTGAGAATATTACTTTCAGGAACATTGTTTCAGAATAATTTTGGTGAATAG 315 0.3746 MEAKSEKRDGCVISHTPGAGKTFLVIAFLVSYLNLFPVLIRENSKYEHKKYMAKALRERTGILILDEGHNPRSTRSRLRKGLLKVETELRILLSGTLFQNNFGE. 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01563 104 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 34 104 IPR044567 GO:0080188
Seca5g01563 104 Gene3D - 35 104 IPR038718 -
Seca5g01563 104 Pfam SNF2-related domain 47 102 IPR000330 GO:0005524|GO:0140658
Seca5g01563 104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 103 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01563 Seca-Chr5 46829359 46829929 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g01563 SNF2_N 2.7e-06 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01563 K10875 - rvl:131320605 110.923