Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01561 ATGGGTAGGATCAAAAGTGGGATTTATTTTGAGCCTTATCATTTATGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTAAATTGTTTGAGGAGTGCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGTGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTCCTTGCTTCAATTATAGCTTGTGTTGAAGGTATTAGTCTTACTGCAGCTTCTCAGTTGATATTTTTGGACTCAGAGTGGAATCCATCGAAGATAAAGCAGGCTAATGCAAGGGATTTTCATCCTGTCCAAGAAAAGAAGGTTTATGTGTATCAACTCTTGGCAAAAGGCTTAATGGAGGAAGATAAGTACCGCATAACCACTTGGAAAGAGTGGGTTTCCAACATGATTTTCAGTGAGGATTTTGTGGAGAACCCTTCCCAGTTGCAAGCAGAGAAGATTGAAGATGATATATTGAGGGAAATGCAAAAAGCCCAGAATTATGCTTGTGACAAACAGTTCAATAGGCTCTCTACAATGGAATTGTCAGATTTAGGTTGTTTTCTTATCATGAGTTGTGGAGTCGTTCTTTTGCAGCGAACAGAGCACTTAATTGGATCCTCTGGAGGAGTGGAAAGGACAAAAGAGAAAGAAAGAAAGAGCAGAGTTGATCTGATGAAGGCTTTGTGTGACAAAGGCATAATTGAAAAATTTGAACTTTCAATGTTCCTGTGA 792 0.3902 MGRIKSGIYFEPYHLCCQGGEGSYLLPQPCTYEAFSKLFEECFKWKKGGEILLLYGEQDLFESGKVIDKFEDPCGVSKVLLASIIACVEGISLTAASQLIFLDSEWNPSKIKQANARDFHPVQEKKVYVYQLLAKGLMEEDKYRITTWKEWVSNMIFSEDFVENPSQLQAEKIEDDILREMQKAQNYACDKQFNRLSTMELSDLGCFLIMSCGVVLLQRTEHLIGSSGGVERTKEKERKSRVDLMKALCDKGIIEKFELSMFL. 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01561 263 CDD SF2_C_SNF 37 133 - -
Seca5g01561 263 Gene3D - 30 198 IPR027417 -
Seca5g01561 263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 183 IPR027417 -
Seca5g01561 263 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 34 186 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01561 Seca-Chr5 46795629 46804460 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01561 48 157 RAD5 or RAD16-like Gene Family AT5G05130 33.333 3.21e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01561 K10875 - ath:AT3G42670 216.083