Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01560 ATGACAATGAATGCTTCTCATTATGAGCCTTTATCTATAGAAAATGACAATGTTTTGTCATTCATTCCTGAGCTCAGTAAAAAGATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTCCGCAAAATATTGCAGGGTCAACACAACCAACACTTATGGAAGCAAAATCTGAAAAAATAGGTGGTTGTGTGATATCTCATACTCCTGGATGTGGGAAAACCTTTCTTGTTATTGCCTTTCTTGTGTATCTAATTCGTGGTCGTAAAGACCTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACTGGTGATGTCAAGCATGTTTTGGATTGCCTTGAAAAGATTAAAAAAGTGGCATCTACACCCCAGTGTTTGGTCATGGGGTATACTTCATTTTTATCACTAACAAGAGAGAATTTAAAGTATGAACACAAGAAGTATATGGATAAAGCTTTGAGAGAAAGCACTTGGATCCTGATACTCGATGAAGGGCACAATCCTAAAAGCACCATGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAAAACTGAGAATATTACTTTCAGGGACATCATTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTCGGCAAGGCCGAAGTTTGTTCAAGATGTGATGAAAGAGTTAGATACAAAACAAAATAAGGGAAATGATAAAAATCCAGAGAAAGCAAAACATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTAA 789 0.3663 MTMNASHYEPLSIENDNVLSFIPELSKKMHDHQKKGFQFIPQNIAGSTQPTLMEAKSEKIGGCVISHTPGCGKTFLVIAFLVYLIRGRKDLRDFDETPLTIPGVPNPTGDVKHVLDCLEKIKKVASTPQCLVMGYTSFLSLTRENLKYEHKKYMDKALRESTWILILDEGHNPKSTMSRLRKGLMKVETKLRILLSGTSFQNNFGEYFNTLCSARPKFVQDVMKELDTKQNKGNDKNPEKAKHLLETRARKFFLDDIANKID. 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01560 262 Gene3D - 4 103 IPR038718 -
Seca5g01560 262 Gene3D - 107 258 IPR038718 -
Seca5g01560 262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 219 IPR027417 -
Seca5g01560 262 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 9 83 IPR044567 GO:0080188
Seca5g01560 262 Pfam SNF2-related domain 143 227 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01560 Seca-Chr5 46750854 46751750 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g01560 SNF2_N 2.2e-08 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01560 K10875 - gmx:100811703 316.62