Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01557 ATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTCCGCAAAATATTGCAGGGTCAACACAACCAACACTTATGGAAGCAAAATCTGAAAAAATAGGTGGTTGTGTGATATCTCATACTCCTGGATGTGGGAAAACCTTTCTTGTTATTGCCTTTCTTGTCATGGGGTATACTTCATTTTTATCACTAACAAGAGAGAATTTAAAGTATGAACACAAGAAGTATATGGATAAATCTTTGAGAGAAAGCACTTGGATCCTGATACTCGATGAAGGGCACAATCCTAAAAGCACCATGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAAAACTGAGAATATTACTTTCAGGGACATTATTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTCGGAAAGGCCGAAGTTTGTTCAAGATGTGATGAAAGAGTTAGATACAAAACAAAATAAGGGAAATGATAAAAATCCAGAGAAAGCAAAACATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTAA 555 0.355 MHDHQKKGFQFIPQNIAGSTQPTLMEAKSEKIGGCVISHTPGCGKTFLVIAFLVMGYTSFLSLTRENLKYEHKKYMDKSLRESTWILILDEGHNPKSTMSRLRKGLMKVETKLRILLSGTLFQNNFGEYFNTLCSERPKFVQDVMKELDTKQNKGNDKNPEKAKHLLETRARKFFLDDIANKID. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01557 184 Gene3D - 57 180 IPR038718 -
Seca5g01557 184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 141 IPR027417 -
Seca5g01557 184 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 53 IPR044567 GO:0080188
Seca5g01557 184 Pfam SNF2-related domain 67 134 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01557 Seca-Chr5 46664763 46665576 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g01557 SNF2_N 3.1e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01557 K10875 - rcu:8272097 185.652