Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01555 ATGGCTAAAGCTTTGAGAGAAAGCACTGGGATCTTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGTTGAGGAAAGGGTTGACGAAAGTAGAGACAGAACTGAGAATATTACTTTCAGGCACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTTCTTGGCAAGGCCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAAATAAGGGAATTGATAAAAATCCAGAGAAAGCAAAACTTTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATACAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACTGATGTGAGGAATGAGCTTTTGCAAAAACTACAAAAGAAAATGGTTGGGTCAAGTGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTTCGAATAAGTTTTACACTTCACAGGAACTAAACCAGCTAGAAAAGTACAAGTCTGATTTCAAGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTGTCATTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAATGGTGGAGAAATTTTATTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAATAATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTCCTTGCTTCAATTACAACTTGTTCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAAGAAAAGAAGGTTTATGTGTATCAACTCTTGGCAAAAGGTTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAGTGGGTTTCCAAAATGATTTTCAATGAGGATTTTGCGGAGAACCCTTCCAAGTGTCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTTAG 1203 0.3882 MAKALRESTGILILDEGHNPRSTRSRLRKGLTKVETELRILLSGTLFQNNFGEYFNTLFLARPKFVQEVLKELDTKQNKGIDKNPEKAKLLLETRARKFFLDDIANKIDSSDDEVRIQGLNMLRKITSGFIDVYESGNSDKLPGLQIYTLLMNLTDVRNELLQKLQKKMVGSSVFPLEGELMVTLGSIHPWLIKTATSSNKFYTSQELNQLEKYKSDFKVGSKVRFILSLVIRVVKEEKVLIFCRNLAPMKLLVQLFEECFKWKNGGEILLLYGEQDLFERGKIIDKFEDPCGVSKVLLASITTCSEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKKVYVYQLLAKGSMEEDKYRRTTWKEWVSKMIFNEDFAENPSKCQAEKIEDDILREMV. 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01555 400 Pfam SNF2-related domain 10 163 IPR000330 GO:0005524|GO:0140658
Seca5g01555 400 CDD SF2_C_SNF 215 351 - -
Seca5g01555 400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 81 IPR027417 -
Seca5g01555 400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 379 IPR027417 -
Seca5g01555 400 Gene3D - 143 400 IPR027417 -
Seca5g01555 400 SMART helicmild6 251 340 IPR001650 -
Seca5g01555 400 Pfam Helicase conserved C-terminal domain 223 339 IPR001650 -
Seca5g01555 400 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 226 392 IPR001650 -
Seca5g01555 400 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 400 IPR044567 GO:0080188
Seca5g01555 400 Gene3D - 2 104 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01555 Seca-Chr5 46631971 46633173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01555 266 358 RAD5 or RAD16-like Gene Family AT5G05130 39.362 1.42e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g01555 Helicase_C 1.9e-13 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01555 K10875 - jre:108991882 562.377