Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01554 ATGACAATGAATGCTTCTCATTATGAGCCTTTATCTATAGAAAATGACAATGTTTTGTCATTGATTCCTGAGCTCAGTAAGAAGATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCAGGGTCAACACAACCAACACTTATGGAAGCAAAATCTGAAAAAATAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGTTATTCCCAGATAAAAAGCCTCTGATCCTTGCTCCAAAAATTCCAAACCCCACTGGTGATGTCAAGCATGTTTTGGATTTCATTGAAAAGATTAAAGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACTGATGTGCAGAATGAGATTTTGCAAAAACTACAAAAGAAAATGGTTGGGTCAAGTGTGTTCCCTTTGGAGGGAAAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTTCGAATAAGTTTTACACTTCACAGGAACTAAACCAGCTAGCAAAGTACAAGTCTGATTTCAAGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCATTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAATAATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTCCTTGCTTCAATTACAACTTGTGCTGAAGGTATTGGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCAGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAAGAAAAGAAGGTTTATGTGTATCAACTCTTGGCAAAAGGTTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAGTGGGTTTCCAACATGATTTTCAATGAGGATTTTGCAGAGAACCCTTCCCAGTGTCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTCAGAATGACAATCCTAAAGCAATCCATATGATCATGAAGAATGAAAAAGCTTCAACAAACTGA 1263 0.3808 MTMNASHYEPLSIENDNVLSLIPELSKKMHDHQKKGFQFIWQNIAGSTQPTLMEAKSEKIGGCVISHTPGAGKTFLVIAFLVSYLKLFPDKKPLILAPKIPNPTGDVKHVLDFIEKIKGLNMLRKITSGFIDVYESGNSDKLPGLQIYTLLMNLTDVQNEILQKLQKKMVGSSVFPLEGKLMVTLGSIHPWLIKTATSSNKFYTSQELNQLAKYKSDFKVGSKVRFILSLIIRVVKEEKVLIFCRNLAPMKLLVQLFEECFKWKKGGEILLLYGEQDLFERGKIIDKFEDPCGVSKVLLASITTCAEGIGLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKKVYVYQLLAKGSMEEDKYRRTTWKEWVSNMIFNEDFAENPSQCQAEKIEDDILREMVQNDNPKAIHMIMKNEKASTN. 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01554 420 CDD SF2_C_SNF 215 351 - -
Seca5g01554 420 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 226 390 IPR001650 -
Seca5g01554 420 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 112 419 IPR044567 GO:0080188
Seca5g01554 420 SMART helicmild6 251 340 IPR001650 -
Seca5g01554 420 Pfam Helicase conserved C-terminal domain 223 339 IPR001650 -
Seca5g01554 420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 400 IPR027417 -
Seca5g01554 420 Gene3D - 143 420 IPR027417 -
Seca5g01554 420 Gene3D - 4 101 IPR038718 -
Seca5g01554 420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 99 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01554 Seca-Chr5 46592781 46594549 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01554 266 358 RAD5 or RAD16-like Gene Family AT5G05130 39.362 1.72e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01554 K10875 - gmx:100781856 438.343