Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01553 ATGACAATGAATGCTTCTCATTATGAGCCTTTATCTATAGAAAATGACAATGTTTTGTCATTGATTCCTGAACTCAGTAAGAAGATATATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCAGGGTCAACACAACCAACACTTATGGAAGCAAAATCTGAAAAAATAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGTTATTCCCAGATAAAAAGCCTCTGATCCTTGCTCCAAAAACTACACTATATACTTGGTACAAGGAATTCAGCAAGTGGGAAATTCCTATTCCAGTGTATCTGATTCGTGGTCTTAAAGACATGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACTGGTGATGTCAAGCATGTTTTGGATTGCATTGAAAAGATTAAAAAGTGGAATCTACACCCCAATTTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACAAGAGAGAATTCAACGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGAGAAAGCACTGGGATCTTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGTTAAGGAAAGGGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCAGGAACATTGTTTCAGAATAATTTTGGTGAATACTTCAACATACTTTGCTTGGCAAGGCCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAAATAAGGGAATTGATAAAAATCCAGAGAAAGAAAAACTTTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATACAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGATTATGAACCTAACTGATGTGCAGAATGAGCTTTTGCAAAAACTACAAAAGAAAATGGTTGGGTCAAGTGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTTCGAATAAGTTTTACACTTCACAGGAACTAAACCAGCTAGAAAAGTACAAGTCTGATTTCAAGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCATTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTTCCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAATAATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTCCTTGCTTCAATTACAACTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGATTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAAGAAAAGAAGGTTTATGTGTATCAACTCTTGGCAAAAGGTTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAGTGGGTTTCCAACATGATTTTCAATGAGGATTTTGCGGAGAACCCTTCCCAGTGTCAAGCAGAGAATATTGAAGATGACATACTAAGGGAAATGGTTCAGAATGACAATCCTAAAGCAATCCATATGATCATGAAGAATGAAAAAGCTTCAACAAACTGA 1830 0.376 MTMNASHYEPLSIENDNVLSLIPELSKKIYDHQKKGFQFIWQNIAGSTQPTLMEAKSEKIGGCVISHTPGAGKTFLVIAFLVSYLKLFPDKKPLILAPKTTLYTWYKEFSKWEIPIPVYLIRGLKDMRDFDETPLTIPGVPNPTGDVKHVLDCIEKIKKWNLHPNFLVMGYTSFLSLTRENSTYEHKKYMAKALRESTGILILDEGHNPRSTRSRLRKGLMKVETELRILLSGTLFQNNFGEYFNILCLARPKFVQEVLKELDTKQNKGIDKNPEKEKLLLETRARKFFLDDIANKIDSSDDEVRIQGLNMLRKITSGFIDVYESGNSDKLPGLQIYTLIMNLTDVQNELLQKLQKKMVGSSVFPLEGELMVTLGSIHPWLIKTATSSNKFYTSQELNQLEKYKSDFKVGSKVRFILSLIIRVVKEEKVLIFFRNLAPMKLLVQLFEECFKWKKGGEILLLYGEQDLFERGKIIDKFEDPCGVSKVLLASITTCAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKKVYVYQLLAKGSMEEDKYRRTTWKEWVSNMIFNEDFAENPSQCQAENIEDDILREMVQNDNPKAIHMIMKNEKASTN. 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01553 609 Pfam SNF2-related domain 39 357 IPR000330 GO:0005524|GO:0140658
Seca5g01553 609 CDD SF2_C_SNF 404 540 - -
Seca5g01553 609 Pfam Helicase conserved C-terminal domain 412 528 IPR001650 -
Seca5g01553 609 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 415 579 IPR001650 -
Seca5g01553 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 329 587 IPR027417 -
Seca5g01553 609 SMART helicmild6 440 529 IPR001650 -
Seca5g01553 609 Gene3D - 4 294 IPR038718 -
Seca5g01553 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 54 253 IPR014001 -
Seca5g01553 609 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 9 608 IPR044567 GO:0080188
Seca5g01553 609 SMART ultradead3 25 265 IPR014001 -
Seca5g01553 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 274 IPR027417 -
Seca5g01553 609 Gene3D - 332 609 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01553 Seca-Chr5 46560450 46562279 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01553 455 580 RAD5 or RAD16-like Gene Family AT5G05130 32.283 2.19e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g01553 SNF2_N 3.3e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01553 K10875 - gmx:100811703 851.662