LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g01552	ATGACAATGAATGCTTCTCATTATGAGCCTTTATCTATAGAAAATGACAATGTTTTGTCATTGATTCCTGAGCTCAGTAAAAAGATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCAGGGTCAACACAACCAACACTTATGGAAGCAAAATCTGAAAAAATAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGTTATTCCCAGATAAAAAGCCTCTGATCCTTGCTCCAAAAACTACATTATATACTTGGTACAAGGAATTCAGCAAGTGGGAAATTCCTATTCCAGTGTATCTGATTCGTGGTCTTAAAGACATGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACTGGTGATGTCAAGCATGTTTTGGATTGCATTGAAAAGATTAAAAAGTGGCATCTACACCCCAGGGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACAAGAGAGAATTCAACGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGAGAAAGCACTGGGATCTTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCAGGCACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAGATAACGGAATTGATAAAAATCCAGAGAAAGCAAAACTTTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGGGAGGATACAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCATATGAACCTAACTGATGTGCAGAATGAGCTTTTGCAAAAACTACAAAAGAAAATGGTTGGGTCAAGTGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTTCGAATAAGTTTTACACTTCACAGGAACTAAACCAGCTAGAAAAGTACAAGTCTGATTTCAAGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCATTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAATAATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTCCTTGCTTCAATTACAACTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAAGAAAAGAAGGTTTATGTGTATCAACTCTTGGCAAAAGGTTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAGTGGGTTTCCAACATGATTTTCAATGAGGATTTTGCGGAGGACCCTTCCCAGTGTCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTCAGAATGACAATCCTAAAGCAATCCATATGATCATGAAGAATGAAAAAGCTTCAACAAACTGA	1830	0.3842	MTMNASHYEPLSIENDNVLSLIPELSKKMHDHQKKGFQFIWQNIAGSTQPTLMEAKSEKIGGCVISHTPGAGKTFLVIAFLVSYLKLFPDKKPLILAPKTTLYTWYKEFSKWEIPIPVYLIRGLKDMRDFDETPLTIPGVPNPTGDVKHVLDCIEKIKKWHLHPRVLVMGYTSFLSLTRENSTYEHKKYMAKALRESTGILILDEGHNPRSTRSRLRKGLMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDTKQDNGIDKNPEKAKLLLETRARKFFLDDIANKIDSSDDEGRIQGLNMLRKITSGFIDVYESGNSDKLPGLQIYTLHMNLTDVQNELLQKLQKKMVGSSVFPLEGELMVTLGSIHPWLIKTATSSNKFYTSQELNQLEKYKSDFKVGSKVRFILSLIIRVVKEEKVLIFCRNLAPMKLLVQLFEECFKWKKGGEILLLYGEQDLFERGKIIDKFEDPCGVSKVLLASITTCAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKKVYVYQLLAKGSMEEDKYRRTTWKEWVSNMIFNEDFAEDPSQCQAEKIEDDILREMVQNDNPKAIHMIMKNEKASTN.	610

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca5g01552	609	CDD	SF2_C_SNF	404	540	-	-
Seca5g01552	609	Gene3D	-	4	291	IPR038718	-
Seca5g01552	609	SMART	ultradead3	25	265	IPR014001	-
Seca5g01552	609	SMART	helicmild6	440	529	IPR001650	-
Seca5g01552	609	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	54	253	IPR014001	-
Seca5g01552	609	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	415	581	IPR001650	-
Seca5g01552	609	PANTHER	SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED	9	608	IPR044567	GO:0080188
Seca5g01552	609	Pfam	SNF2-related domain	38	357	IPR000330	GO:0005524\|GO:0140658
Seca5g01552	609	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	329	590	IPR027417	-
Seca5g01552	609	Gene3D	-	332	609	IPR027417	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g01552	Seca-Chr5	46499472	46501301	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g01552	455	580	RAD5 or RAD16-like Gene Family	AT5G05130	33.071	9.01e-12	66.2

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Seca5g01552		SNF2_N	2.2e-17	CL0023

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g01552	K10875		-	gmx:100811703	866.685

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