Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01552 ATGACAATGAATGCTTCTCATTATGAGCCTTTATCTATAGAAAATGACAATGTTTTGTCATTGATTCCTGAGCTCAGTAAAAAGATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCAGGGTCAACACAACCAACACTTATGGAAGCAAAATCTGAAAAAATAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGTTATTCCCAGATAAAAAGCCTCTGATCCTTGCTCCAAAAACTACATTATATACTTGGTACAAGGAATTCAGCAAGTGGGAAATTCCTATTCCAGTGTATCTGATTCGTGGTCTTAAAGACATGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACTGGTGATGTCAAGCATGTTTTGGATTGCATTGAAAAGATTAAAAAGTGGCATCTACACCCCAGGGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACAAGAGAGAATTCAACGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGAGAAAGCACTGGGATCTTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCAGGCACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAGATAACGGAATTGATAAAAATCCAGAGAAAGCAAAACTTTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGGGAGGATACAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCATATGAACCTAACTGATGTGCAGAATGAGCTTTTGCAAAAACTACAAAAGAAAATGGTTGGGTCAAGTGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTTCGAATAAGTTTTACACTTCACAGGAACTAAACCAGCTAGAAAAGTACAAGTCTGATTTCAAGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCATTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAATAATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTCCTTGCTTCAATTACAACTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAAGAAAAGAAGGTTTATGTGTATCAACTCTTGGCAAAAGGTTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAGTGGGTTTCCAACATGATTTTCAATGAGGATTTTGCGGAGGACCCTTCCCAGTGTCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTCAGAATGACAATCCTAAAGCAATCCATATGATCATGAAGAATGAAAAAGCTTCAACAAACTGA 1830 0.3842 MTMNASHYEPLSIENDNVLSLIPELSKKMHDHQKKGFQFIWQNIAGSTQPTLMEAKSEKIGGCVISHTPGAGKTFLVIAFLVSYLKLFPDKKPLILAPKTTLYTWYKEFSKWEIPIPVYLIRGLKDMRDFDETPLTIPGVPNPTGDVKHVLDCIEKIKKWHLHPRVLVMGYTSFLSLTRENSTYEHKKYMAKALRESTGILILDEGHNPRSTRSRLRKGLMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDTKQDNGIDKNPEKAKLLLETRARKFFLDDIANKIDSSDDEGRIQGLNMLRKITSGFIDVYESGNSDKLPGLQIYTLHMNLTDVQNELLQKLQKKMVGSSVFPLEGELMVTLGSIHPWLIKTATSSNKFYTSQELNQLEKYKSDFKVGSKVRFILSLIIRVVKEEKVLIFCRNLAPMKLLVQLFEECFKWKKGGEILLLYGEQDLFERGKIIDKFEDPCGVSKVLLASITTCAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKKVYVYQLLAKGSMEEDKYRRTTWKEWVSNMIFNEDFAEDPSQCQAEKIEDDILREMVQNDNPKAIHMIMKNEKASTN. 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01552 609 CDD SF2_C_SNF 404 540 - -
Seca5g01552 609 Gene3D - 4 291 IPR038718 -
Seca5g01552 609 SMART ultradead3 25 265 IPR014001 -
Seca5g01552 609 SMART helicmild6 440 529 IPR001650 -
Seca5g01552 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 54 253 IPR014001 -
Seca5g01552 609 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 415 581 IPR001650 -
Seca5g01552 609 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 9 608 IPR044567 GO:0080188
Seca5g01552 609 Pfam SNF2-related domain 38 357 IPR000330 GO:0005524|GO:0140658
Seca5g01552 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 329 590 IPR027417 -
Seca5g01552 609 Gene3D - 332 609 IPR027417 -
Seca5g01552 609 Pfam Helicase conserved C-terminal domain 412 528 IPR001650 -
Seca5g01552 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 261 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01552 Seca-Chr5 46499472 46501301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01552 455 580 RAD5 or RAD16-like Gene Family AT5G05130 33.071 9.01e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g01552 SNF2_N 2.2e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01552 K10875 - gmx:100811703 866.685