Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01551 ATGGAGGAAGCAATGGCAGCAAGATATTGGTGTCATATGTGCTCTCAAATGGTGAATCCCATCATGGAAGTGGAGATCAAATGCCCATTTTGTCAAAGTGGTTTTGTTGAAGAAATGAGTAACACTACCATTAGCAGTGCCTTTCAAAATACACCAGAAGCTGATTTTGGATCCGAACGGGCTCTCTCCCTTTGGGCACCAATCTTGCTAGGCATGATGGGTAATCCACATCATCGTCGAAGACTCAGACGAATTGAGCTTGATGATGATGACAGTGATGATAATGTTAATCGTGATGATGTTGACAGTGCAGCACGTCATGGTGGAGACAATGAATATGATCAAGACATTGAGTCCATCATTAGGAGGAGAAGGAGAAGCTCAGCTACCATTCAACAATTGCTCCAAGGCATAAGAGCTGGATTGGCATCTGAATCACAAGTGAATACTGACAATGATGAACATTTTAGGGAAAGAGAAAGGGATAGAGATAGAGACAGAGAAAGAGAGCGTGTTATCTTGATTAATCCTTTTAATCAGACTATTATTGTTCAAGGTTCCTTTGGTACAAACAGGGATCAAAGTGATAACCGTGGTCCCATTGGATCTCTGGGTGACTATTTTATAGGGCCTGGTTTGGATTTGTTGTTGCAACATTTGGCTGAGAATGACCCCAATAGGTATGGAACTCCACCTGCAAAGAAGGAGGCCATTGATGCTCTGCCTACTGTGACAATCAATGAGAATTTGCAGTGTTCTGTGTGTTTGGAAGATTTTGAAGCTGGTTCTGAGGCTAAAGAGATGCCTTGTAAACATAGGTTTCATTGTAAGTGCATCCTGCCCTGGCTGGAGCTTCATAGTTCTTGTCCAGTATGCAGGTTTCAATTGCCGGTGGATGAATCTAAGCAAGACTCTGATGTGTCAAGGAATAGCAGAAATCAAAGGGAGGATGAAAATAATGGACATGAAAATGCTGAAGAAGGAGATAGTGAAGAGAGGAATGCAAGCGAGGGTAGAAGATTCTCATTTCCATGGCCTTTCAGTGGATTGTTTTCTTCATTAAACTCTTCATCTTCCTCATCCTCCAGCCCCAATGCAAACGGAAATGGTTCTCAATCAGAAGACAGCTGA 1131 0.4244 MEEAMAARYWCHMCSQMVNPIMEVEIKCPFCQSGFVEEMSNTTISSAFQNTPEADFGSERALSLWAPILLGMMGNPHHRRRLRRIELDDDDSDDNVNRDDVDSAARHGGDNEYDQDIESIIRRRRRSSATIQQLLQGIRAGLASESQVNTDNDEHFRERERDRDRDRERERVILINPFNQTIIVQGSFGTNRDQSDNRGPIGSLGDYFIGPGLDLLLQHLAENDPNRYGTPPAKKEAIDALPTVTINENLQCSVCLEDFEAGSEAKEMPCKHRFHCKCILPWLELHSSCPVCRFQLPVDESKQDSDVSRNSRNQREDENNGHENAEEGDSEERNASEGRRFSFPWPFSGLFSSLNSSSSSSSSPNANGNGSQSEDS. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01551 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 299 IPR013083 -
Seca5g01551 376 ProSiteProfiles Zinc finger RING-type profile. 252 293 IPR001841 -
Seca5g01551 376 MobiDBLite consensus disorder prediction 145 168 - -
Seca5g01551 376 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Seca5g01551 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 148 297 - -
Seca5g01551 376 Pfam Ring finger domain 251 293 IPR001841 -
Seca5g01551 376 SUPERFAMILY RING/U-box 240 302 - -
Seca5g01551 376 MobiDBLite consensus disorder prediction 89 117 - -
Seca5g01551 376 MobiDBLite consensus disorder prediction 98 117 - -
Seca5g01551 376 MobiDBLite consensus disorder prediction 300 338 - -
Seca5g01551 376 FunFam E3 ubiquitin-protein ligase RING1-like 219 299 - -
Seca5g01551 376 SMART ring_2 252 292 IPR001841 -
Seca5g01551 376 MobiDBLite consensus disorder prediction 300 340 - -
Seca5g01551 376 MobiDBLite consensus disorder prediction 150 168 - -
Seca5g01551 376 MobiDBLite consensus disorder prediction 353 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01551 Seca-Chr5 46416355 46419138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01551 162 299 C3H Transcription Factor Family AT1G26800 43.571 5.13e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01551 - K11982 gmx:100784876 484.182