Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01548 ATGGGAATCGATGAAGCTGGAAGAGGCCCTGTTCTAGATTCTAAAATACTAAAAGAAGAGAAGAGGGAAGAGTTATTTGAAGCTTTAAAAGCCAATGATTCTATTGGATGGGCTGTTGATGTCATTGACCCAAGGGAGCTCTCTGCTAAAATGCTCAAGAAGAATAAGATAAACTTGAATGAGATATCACATGACTCTGCAATGGGCCTCATCGATAGGCTCAAACGACTTGAGGCTCCACAAGGCAGGTGCTTGTGGTGCATTTATGCTGTTATGCGTGTTATCCAATTTGTTTTACTAGGCATGAACATATTCCTTGTATTTTTGGCAGCGAATGATATGCTTGTGTTCATGCTGAAATGGTACGAGAAGTTTCCTTCCTACAGATCAAGGGAGTTGTTCCTCACTGGAGAAAGCTATGCAGGACATACAACGACGATTAAAGCTAGAACCATCGTTGTATGTCCAAGAAACAACGACGGTTTCTGTGTGAACCGTCGTTGTTTCCTGGACAAACAACGACGGTTCCAGCTTGAACCGTCGTTGTTTCTGACTTATAACGACGGTTCCCAGCCCAACCGTCGTTAA 588 0.4303 MGIDEAGRGPVLDSKILKEEKREELFEALKANDSIGWAVDVIDPRELSAKMLKKNKINLNEISHDSAMGLIDRLKRLEAPQGRCLWCIYAVMRVIQFVLLGMNIFLVFLAANDMLVFMLKWYEKFPSYRSRELFLTGESYAGHTTTIKARTIVVCPRNNDGFCVNRRCFLDKQRRFQLEPSLFLTYNDGSQPNRR. 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01548 195 SUPERFAMILY alpha/beta-Hydrolases 110 152 IPR029058 -
Seca5g01548 195 Gene3D alpha/beta hydrolase 108 180 IPR029058 -
Seca5g01548 195 Gene3D - 11 88 IPR036397 GO:0003676
Seca5g01548 195 PANTHER RIBONUCLEASE H2 SUBUNIT A 12 75 IPR001352 GO:0003723|GO:0004523
Seca5g01548 195 SUPERFAMILY Ribonuclease H-like 1 77 IPR012337 -
Seca5g01548 195 ProSitePatterns Serine carboxypeptidases, serine active site. 135 142 IPR018202 GO:0004185
Seca5g01548 195 Pfam Ribonuclease HII 12 77 IPR024567 GO:0004523
Seca5g01548 195 Pfam Serine carboxypeptidase 110 152 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01548 Seca-Chr5 46271925 46274490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01548 1 54 Core DNA Replication Machinery Family AT2G25100 58.974 9.75e-20 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01548 K10743 - psat:127135270 128.257