Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01545 ATGGCGGGAAACCATTTTCCTGTGTGTATGAGTGTTCTTGCTGTTGACGGCGACCAAACTGGTCTAAAAGTGTTGGAGAACCTGCTTCGCAAATTCCAGTATCATGTTACTACAACTACTCAGGCAATTGAGGCTCTAGAAATGTTAAGGAAAAACAAAAATGAGTTTGAGCTTGTTATTAGTGATGTAAATATGAAATATATGGACGTAAGGAAAAATATTGATGGGAAGCATCAAGATATGGCTGCCAATAAAGAGAAAATCTATAATATGGCGGGGAAAGATGTTCAAAGTATCATCACATCATACAACAATCCTGACCATAATAAACTGGTAGGTAAAAAGAGGAAGAAACAAAGTGAGCAAAAGGAACACCATGATAAAGAGAATGTAGGGAAGAATGATGAAGCCTCAATTAGGAAGAAGCCTCGTTTAGTTTGGACTGCTGAACTGCATAGAAAATTTGTTTACACAGTCAATCAACATGGACTCAATAAGGCTTATCCAAGGAGATTATTAGAGTTGATGAATATTGAAGGGCTTACAAAAGAACACGTAGCAAGCCATCTCCAGAAATATAGATTGAGTTTGAAAAAGCCAATTCAACAGAGTTGGATCAAAGAATATGGAGATTTTGGAACCCTATTTGAATCAAGAAGAATTTTAGAAAACAAACTCCCATCATATGGATCCTATGGAACATGCAAGATGAACTCTCCCTATGGTATGAACTTATCAAGAATGAATTCGTTTGTTCCGTCTCAGAACATTCTCACCTCCACAGAAACACAGAATTCAGAAGTATTTCATTCTTCTGTTGAGGCTTCTTTGGTCAATGTTGAATCTGTTGACACTGACATTTGTGCTGATTTATTAGAGTATTGGCCTAATGAAGCTTGGAGCGAGACTCAGACTCAGTTATCTAACTTTTCTGTTCATTCATCTTCATCGAGTGAGGTTTTAAACAATGATCAACATACTCACGATTCTTTGAACTTTTCCTCCTCCATTTTTCCTAGTGAGAAATCTACAGTAGATTTTTCTTCCCAAAGTGACGTTACTGATTTTTTAGAGGATGTTAGAGTTCAAATACAAAGTCAAGAAAACTTACTTGAAAATACCTTCCACCAGCAGTGTTGTTGGTCCTCCTTTGGAGGATGTTAG 1164 0.3694 MAGNHFPVCMSVLAVDGDQTGLKVLENLLRKFQYHVTTTTQAIEALEMLRKNKNEFELVISDVNMKYMDVRKNIDGKHQDMAANKEKIYNMAGKDVQSIITSYNNPDHNKLVGKKRKKQSEQKEHHDKENVGKNDEASIRKKPRLVWTAELHRKFVYTVNQHGLNKAYPRRLLELMNIEGLTKEHVASHLQKYRLSLKKPIQQSWIKEYGDFGTLFESRRILENKLPSYGSYGTCKMNSPYGMNLSRMNSFVPSQNILTSTETQNSEVFHSSVEASLVNVESVDTDICADLLEYWPNEAWSETQTQLSNFSVHSSSSSEVLNNDQHTHDSLNFSSSIFPSEKSTVDFSSQSDVTDFLEDVRVQIQSQENLLENTFHQQCCWSSFGGC. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01545 387 FunFam Two-component response regulator 138 200 - -
Seca5g01545 387 Pfam Myb-like DNA-binding domain 146 194 IPR001005 -
Seca5g01545 387 Gene3D - 9 105 - -
Seca5g01545 387 Gene3D - 138 199 - -
Seca5g01545 387 SUPERFAMILY CheY-like 10 69 IPR011006 -
Seca5g01545 387 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 81 322 IPR044841 GO:0003700|GO:0006355
Seca5g01545 387 MobiDBLite consensus disorder prediction 117 137 - -
Seca5g01545 387 NCBIfam myb-like DNA-binding domain, SHAQKYF class 142 195 IPR006447 GO:0003677
Seca5g01545 387 SUPERFAMILY Homeodomain-like 140 199 IPR009057 -
Seca5g01545 387 MobiDBLite consensus disorder prediction 102 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01545 Seca-Chr5 46190844 46193011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01545 2 199 Response Regulator Gene Family AT2G25180 42.683 2.57e-43 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca5g01545 Myb_DNA-binding 8.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01545 - K14491 psat:127085782 196.823