Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01544 ATGGCGGGAAACCATTTTCCTGTGGGTACGTGTGTTCTTGCTGTTGACGGCGACCAAACTGGTCTAAAAGTGTTGGAGAACCTGCTTCGCAAATGCCAGTATCATGTTACTACAACTACTCAGACAATTGAGGCTCGAGAAATGTTGAAGAAAAACCGAAATGAGTTTGAGCTTGTTATTAGTGATGTAAATATGACAGATATGGACCATTTCAAATTTTTTGAACAAGTGGTACTTGAAATGGACTTACCAATAATCAGTAAAAAGACGAAGAAACAAAGTGAGCGAAAGGAACACCATGATAAAGAGAATGGAGGGAAGAATGAGGAAGCCTCAACTTGGAAGAAGCCTCATTTAGTTTGGACTGCTGAACTGCATAAAAAATTTGTTTACGCAGTCAATCAACTTGGACTCAATAAGGCTTATCCAAGGAGATTATTAGAGTTGATGAATATTGAAGTGCTTACAAAAGAACACGTAGCAAGCCATCTTCATAAATATAAATTGAGTTTGAAAAAGCCAATTCAACAGAGTTGGACCAAAGAATATGCAGATTTTGGAACCCTATTTGAACCAAGAAGAATTTTAGAAAAAAAACTCCCATCATATGGATCCTATGGAACATGCAAGCTGAACTCTCCCTATGGTGTGAACTTATCAAGAATGAATTCATTTGTTCCGTCTCAGAACATTCTCACCTCCACAGAAACACAGAATTCAGAAAGGATGTTAGAGTTCAAATACAATGCCATGAAAACTTACTTGAAAATACCTTCCACCAGCAGTGTTGTTGGTCCTCCTTTGGAGGATGTTAGATTTACTACAACTACTCAGGCAATTGAGGCTATAGAAATGTTAAAGAAAAACCGAAATGAGTTTGAGCTTGTTATTAGTGATGTAAATATGACAGATATGGACGGTTTCAAATTTATTGAACAAGTGGTACATGAAATGGACTTACCAATAATTAAGGCTTATCCAAGGAGATTATTAGAGTTGATGAATATTGAAGGGCTTACAAAAGAACACGTAGCAAGCCATCTCCATAAATATAGATTGAGTTTGAAAAAGGCAATTCAACAGAGTTGGATCAATGAATATGGAGATTTTGGAACCCTATTTGAATCAAGAAGAATTTTAGAAAACAAACTCCCATCATATGGATCCTATGGAACATGCAAATTAAAATCTCCCTATGAGTATTGGCCTAGTGAAGCTTGGAGCGAGACTCAGACTCAGTTATCCAACTTTTCTGTTCATTCATCTTCATCGAGTGAGGTTTTCAACAATGATCAACATACTCACGATTCTTTGAACTTTTCCTCCATTTTTCCTAGTGAGAAATCTACAGTAGATTTTTCTTCCCAAAGTGACGTTACTGATTTTTTAGAGGATGTTAGAGTTCAAATACAATTCCAAGAAAACTTACTTGAAAATACCTTCCACCAGCAGTGTTGTTCGTCCTCCTTTGGAGGGTCTTAG 1482 0.3677 MAGNHFPVGTCVLAVDGDQTGLKVLENLLRKCQYHVTTTTQTIEAREMLKKNRNEFELVISDVNMTDMDHFKFFEQVVLEMDLPIISKKTKKQSERKEHHDKENGGKNEEASTWKKPHLVWTAELHKKFVYAVNQLGLNKAYPRRLLELMNIEVLTKEHVASHLHKYKLSLKKPIQQSWTKEYADFGTLFEPRRILEKKLPSYGSYGTCKLNSPYGVNLSRMNSFVPSQNILTSTETQNSERMLEFKYNAMKTYLKIPSTSSVVGPPLEDVRFTTTTQAIEAIEMLKKNRNEFELVISDVNMTDMDGFKFIEQVVHEMDLPIIKAYPRRLLELMNIEGLTKEHVASHLHKYRLSLKKAIQQSWINEYGDFGTLFESRRILENKLPSYGSYGTCKLKSPYEYWPSEAWSETQTQLSNFSVHSSSSSEVFNNDQHTHDSLNFSSIFPSEKSTVDFSSQSDVTDFLEDVRVQIQFQENLLENTFHQQCCSSSFGGS. 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01544 493 ProSiteProfiles Response regulatory domain profile. 11 127 IPR001789 GO:0000160
Seca5g01544 493 NCBIfam myb-like DNA-binding domain, SHAQKYF class 324 353 IPR006447 GO:0003677
Seca5g01544 493 NCBIfam myb-like DNA-binding domain, SHAQKYF class 116 169 IPR006447 GO:0003677
Seca5g01544 493 Gene3D - 8 112 - -
Seca5g01544 493 SUPERFAMILY CheY-like 271 323 IPR011006 -
Seca5g01544 493 SUPERFAMILY CheY-like 11 86 IPR011006 -
Seca5g01544 493 SUPERFAMILY Homeodomain-like 113 173 IPR009057 -
Seca5g01544 493 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 320 359 IPR044841 GO:0003700|GO:0006355
Seca5g01544 493 Gene3D - 279 358 - -
Seca5g01544 493 Gene3D - 113 173 - -
Seca5g01544 493 FunFam Two-component response regulator 112 174 - -
Seca5g01544 493 MobiDBLite consensus disorder prediction 89 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01544 Seca-Chr5 46180324 46187875 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01544 4 86 Response Regulator Gene Family AT2G25180 66.265 8.08e-29 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Seca5g01544 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01544 - K14491 gra:105770301 172.555