Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01537 ATGAGGAACCCGACATGCTCAACCGCAGCGAAAGTAACAAACAAGAAGAAGAGCGGTAACAGTAGTAACGGCAATGGTAATGTTAATGGCAGCAGCAGCACGATGACGACTAGTACTACTACTCCATGCTGTAGCAAGGTTGGATTGAAGAGAGGGCCATGGACACCCGAGGAAGACGAAGTGTTATCTGATTACATAAGGAAAGAAGGAGAAGGTCGTTGGAGAACTCTTCCCAAAAGAGCCGGCCTCCTCCGCTGCGGCAAAAGCTGCCGCCTCCGTTGGATGAACTATCTCCGCCCTTCCGTCAAACGCGGCCAGATCGCCCCCGACGAAGAAGATCTCATCCTCCGTCTCCACCGCCTCCTCGGCAATCGGTGGTCTTTGATAGCTGGGAGAATCCCAGGAAGAACAGATAATGAGATAAAGAACTACTGGAACACACATCTCAGCAAGAAGCTTATTAGCCAAGGGATTGATCCAAGAACCCACAAACCTCTCAACCCACCCACATCTTCTACTACTACACCACCTCCTCCATACCAAATCCCTAATTCTATTACTACTACTCATCATCATGGTATCAACCAAGAATTTGATCCCAAGAGCATCTCTCAAACAGCAGTTCATGAGAATAATAATATGATCGTTGCTTATGAGAATTTTAATATTCAAGAAGCTGCAGCTGCTGCTGCAAGTGATGATGTTTCTGCGATGGATCATTTACTTGGGGCCAATAACGTCCAGGATTATGATGATGATGATATGAATATCAATTATTGTGCTGATGATGTGTTTTCTTCCTTCCTCAATTCCTTGATCAACGAGGATGCTTTTGCTTCACAGAGACACGTGGTGCAATCAGAGCAGCCTCCAAATGATAATGATCCTTTGATTTCATCTGCTGCTGCACTACCGCCTGCACCAGGTTATGGCCTTGGTGTTGTGTGGGAATCGCCACTCATGTCTGCTACTTTCAGCCAAAACGACGACCCTAATGCCAACAGGGTTGTTGATCACCATGAATAG 1026 0.4649 MRNPTCSTAAKVTNKKKSGNSSNGNGNVNGSSSTMTTSTTTPCCSKVGLKRGPWTPEEDEVLSDYIRKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPPTSSTTTPPPPYQIPNSITTTHHHGINQEFDPKSISQTAVHENNNMIVAYENFNIQEAAAAAASDDVSAMDHLLGANNVQDYDDDDMNINYCADDVFSSFLNSLINEDAFASQRHVVQSEQPPNDNDPLISSAAALPPAPGYGLGVVWESPLMSATFSQNDDPNANRVVDHHE. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01537 341 MobiDBLite consensus disorder prediction 1 47 - -
Seca5g01537 341 CDD SANT 109 149 IPR001005 -
Seca5g01537 341 MobiDBLite consensus disorder prediction 157 180 - -
Seca5g01537 341 FunFam Myb transcription factor 48 104 - -
Seca5g01537 341 SUPERFAMILY Homeodomain-like 48 145 IPR009057 -
Seca5g01537 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 153 IPR017930 -
Seca5g01537 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 98 IPR017930 -
Seca5g01537 341 ProSiteProfiles Myb-like domain profile. 46 98 IPR001005 -
Seca5g01537 341 FunFam transcription repressor MYB5-like 108 174 - -
Seca5g01537 341 Gene3D - 48 104 - -
Seca5g01537 341 Gene3D - 108 174 - -
Seca5g01537 341 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 41 224 - -
Seca5g01537 341 ProSiteProfiles Myb-like domain profile. 99 149 IPR001005 -
Seca5g01537 341 MobiDBLite consensus disorder prediction 1 45 - -
Seca5g01537 341 SMART sant 103 151 IPR001005 -
Seca5g01537 341 SMART sant 50 100 IPR001005 -
Seca5g01537 341 Pfam Myb-like DNA-binding domain 108 149 IPR001005 -
Seca5g01537 341 Pfam Myb-like DNA-binding domain 51 98 IPR001005 -
Seca5g01537 341 CDD SANT 53 98 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01537 Seca-Chr5 45962616 45964253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01537 36 303 MYB Transcription Factor Family AT3G13540 50.741 3.18e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca5g01537 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01537 K09422 - gmx:100797847 352.443