Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca5g01534 | ATGAGAGGAAGGAGTTACAGTCCATCGCCACCACCAAGGGGTTACAGCAGAAGAGGAGGAGGAGGAAGGAGTCCAAGCCCTAGGGGCCGCTATTCAGGTCGTCCTAGAGATCTCCCTACAAGCCTTCTTGTTCGTAACCTTCGCCATGACTGTAGGCCTGAGGATCTTCGCAGACCTTTTGGTCAATTTGGTCCTCTTAAAGACATTTACTTGCCTAAGGATTATTACACTGGAGATCCCCGTGGTTTTGGTTTTGTCCAATATGTTGATCCTGCGGATGCTGCTGATGCTAAATATCATATGGATGGTCAAATTCTTCTTGGGCGGGAGTTGACTGTTGTCTTTGCTGAGGAAAATAGAAAGAAGCCAACTGAGATGAGGCAAAGAGAGAGAAGGGGGGGTAGATTTTATGATCGAAGGAGGTCTCCTCCTCGTTATTCTCGTTCGCCCCGCTACTCTCGATCTCCACCACCACGTCATAGATCTCGCTCTCGCAGTCGTGACTATTATTCCCCTCCTCCCAAACGAAGGGAATATTCAAGGTATGTGTCCACTGGCTAG | 561 | 0.4884 | MRGRSYSPSPPPRGYSRRGGGGRSPSPRGRYSGRPRDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGDPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPTEMRQRERRGGRFYDRRRSPPRYSRSPRYSRSPPPRHRSRSRSRDYYSPPPKRREYSRYVSTG. | 187 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca5g01534 | 186 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 39 | 174 | - | - | |
Seca5g01534 | 186 | MobiDBLite | consensus disorder prediction | 120 | 145 | - | - | |
Seca5g01534 | 186 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 42 | 111 | IPR000504 | GO:0003723 | |
Seca5g01534 | 186 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 40 | 118 | IPR000504 | GO:0003723 | |
Seca5g01534 | 186 | SMART | rrm1_1 | 41 | 114 | IPR000504 | GO:0003723 | |
Seca5g01534 | 186 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Seca5g01534 | 186 | SUPERFAMILY | RNA-binding domain, RBD | 40 | 145 | IPR035979 | GO:0003676 | |
Seca5g01534 | 186 | MobiDBLite | consensus disorder prediction | 120 | 186 | - | - | |
Seca5g01534 | 186 | FunFam | Serine/arginine-rich SC35-like splicing factor SCL30A | 32 | 149 | - | - | |
Seca5g01534 | 186 | Gene3D | - | 34 | 182 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca5g01534 | Seca-Chr5 | 45928960 | 45932136 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca5g01534 | 40 | 172 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 26.316 | 4.90e-10 | 55.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca5g01534 | K12900 | - | gmx:100775883 | 229.565 |