Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01534 ATGAGAGGAAGGAGTTACAGTCCATCGCCACCACCAAGGGGTTACAGCAGAAGAGGAGGAGGAGGAAGGAGTCCAAGCCCTAGGGGCCGCTATTCAGGTCGTCCTAGAGATCTCCCTACAAGCCTTCTTGTTCGTAACCTTCGCCATGACTGTAGGCCTGAGGATCTTCGCAGACCTTTTGGTCAATTTGGTCCTCTTAAAGACATTTACTTGCCTAAGGATTATTACACTGGAGATCCCCGTGGTTTTGGTTTTGTCCAATATGTTGATCCTGCGGATGCTGCTGATGCTAAATATCATATGGATGGTCAAATTCTTCTTGGGCGGGAGTTGACTGTTGTCTTTGCTGAGGAAAATAGAAAGAAGCCAACTGAGATGAGGCAAAGAGAGAGAAGGGGGGGTAGATTTTATGATCGAAGGAGGTCTCCTCCTCGTTATTCTCGTTCGCCCCGCTACTCTCGATCTCCACCACCACGTCATAGATCTCGCTCTCGCAGTCGTGACTATTATTCCCCTCCTCCCAAACGAAGGGAATATTCAAGGTATGTGTCCACTGGCTAG 561 0.4884 MRGRSYSPSPPPRGYSRRGGGGRSPSPRGRYSGRPRDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGDPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPTEMRQRERRGGRFYDRRRSPPRYSRSPRYSRSPPPRHRSRSRSRDYYSPPPKRREYSRYVSTG. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01534 186 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 39 174 - -
Seca5g01534 186 MobiDBLite consensus disorder prediction 120 145 - -
Seca5g01534 186 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 111 IPR000504 GO:0003723
Seca5g01534 186 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Seca5g01534 186 SMART rrm1_1 41 114 IPR000504 GO:0003723
Seca5g01534 186 MobiDBLite consensus disorder prediction 1 41 - -
Seca5g01534 186 SUPERFAMILY RNA-binding domain, RBD 40 145 IPR035979 GO:0003676
Seca5g01534 186 MobiDBLite consensus disorder prediction 120 186 - -
Seca5g01534 186 FunFam Serine/arginine-rich SC35-like splicing factor SCL30A 32 149 - -
Seca5g01534 186 Gene3D - 34 182 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01534 Seca-Chr5 45928960 45932136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01534 40 172 Eukaryotic Initiation Factors Gene Family AT4G34110 26.316 4.90e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01534 K12900 - gmx:100775883 229.565