Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01526 ATGTCAGCCTGGGAGAAGGAAGAAGAAGCAGAAGAGGCACATGCACAAGTTGATATATGGAAAATCATATGTGGATTTGTGGAAATGGCAGCGGTGAAATGTGCCATTGAACTTGGCATACCTGAAGCCATTGAAAAGCATGGAAGCCCCATGACACTATTGGAGCTATCATCAACACTTGGATGTGATCCTTCATATCTTAACCGCATCATGAGGTTCTTAGTGAACCGAAGGATCTTCAAAACCATACCCATCATACATGACTCTCTAGGCTATGCTCACACACCATTGTCTCGTTGTTTGATGAGAAATGGTGAACATAGCATGGCTTCTTTAATTTTGTTGCAGAGTAGTCCCATAATGCTAGCACCTTGGCATAGTCTAAGTGCTCGTGTTTTGGTTAATGGCAATCCCTCATTTGAAAAGGTTTACGGTCAAGATCTATGGCAATATGTGGCGGAAAATCTTGATCATAGCAACCTCTTCAATGAAGCTATGGCATGTGATGCAAAGTTTGTTGTGCCTGCCATTGTTGAAGGTTGTAGTGAAGCATTTGATGGTGTTAGCACCCTTGTGGATGTGGGTGGGGGGAATGGCACCACCTCTCGCATGATCGCTAAGGCTTGCCCTCGGATTCAATTGATCAATTTTGATCTTCCTCATGTCATTGCTGCAGCGCCAAAGTGCAATGGGGTGGAACATGTAGCAGGTGACATGTTCCAATGTGTCCCCAAAGCTGATGCTGTATTTCTTAAGTGGATTTTGCATGACTGGGGTGATAAAGAGTGCATCCAAATCTTAAAGAAGTGTAGAGAAGCTATTCCAAAGGAAAACGGAAGGGTTATTATTGTGGAAGCGGTGATTGAAGAAGGAGAAGAAAAACGTGACAAGTTCAAAGATATAGGATTACTACTGGACATGGTGATGATGGCACACACTAGTTTAGGCAAAGAAAGGACACTAAAAGAGTGGGACTATGTGATTAAAATGGCTGGATTTAGTGCATACACCCTGAAAGCTATCAATGCTGTGCAGTCTGTAATTTTGGCTTTCTCTTGA 1059 0.4287 MSAWEKEEEAEEAHAQVDIWKIICGFVEMAAVKCAIELGIPEAIEKHGSPMTLLELSSTLGCDPSYLNRIMRFLVNRRIFKTIPIIHDSLGYAHTPLSRCLMRNGEHSMASLILLQSSPIMLAPWHSLSARVLVNGNPSFEKVYGQDLWQYVAENLDHSNLFNEAMACDAKFVVPAIVEGCSEAFDGVSTLVDVGGGNGTTSRMIAKACPRIQLINFDLPHVIAAAPKCNGVEHVAGDMFQCVPKADAVFLKWILHDWGDKECIQILKKCREAIPKENGRVIIVEAVIEEGEEKRDKFKDIGLLLDMVMMAHTSLGKERTLKEWDYVIKMAGFSAYTLKAINAVQSVILAFS. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01526 352 CDD AdoMet_MTases 190 284 - -
Seca5g01526 352 Pfam Dimerisation domain 31 75 IPR012967 GO:0046983
Seca5g01526 352 PIRSF O-mtase 1 352 IPR016461 GO:0008168
Seca5g01526 352 Gene3D Vaccinia Virus protein VP39 103 350 IPR029063 -
Seca5g01526 352 Gene3D - 2 101 IPR036388 -
Seca5g01526 352 FunFam O-methyltransferase family protein 103 351 - -
Seca5g01526 352 Pfam O-methyltransferase domain 125 334 IPR001077 GO:0008171
Seca5g01526 352 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 352 IPR016461 GO:0008168
Seca5g01526 352 FunFam O-methyltransferase family protein 3 101 - -
Seca5g01526 352 PANTHER O-METHYLTRANSFERASE 29 333 IPR016461 GO:0008168
Seca5g01526 352 SUPERFAMILY "Winged helix" DNA-binding domain 9 105 IPR036390 -
Seca5g01526 352 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 106 348 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01526 Seca-Chr5 45688242 45690372 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01526 31 335 Monolignol Biosynthesis Gene Families AT5G54160 37.261 7.05e-66 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01526 K22588 - gmx:100782951 489.96