Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01523 ATGTCAGCATGGGAGAAGGAAGAAGAAGCAAAAGAGGCACATGCACAAGTTGATATATGGAAAATCATATGTGGATTTGTGGAAATGGCAGCGGTGAAATGTGCCATTGAACTTGGCATACCTGAAGCCATTGAAAAGCACGGAAGCCCCATGACACTATTGGAGCTATCATCTACACTTGGATGTGATCCTTCATATCTTAACCGCATCATGAGGTTCTTAGTGAACCGAAAGATCTTCAAAATCATACCCATCAAACATGACTCTCTAGGCTATGCTCACACAACATTGTCTCGCTGTTTGATGAGAAATGGTGAACATAGCATGGCTTCTTTAATTTTGATGGAGACTAGTCCCATAATGCTAGCACCTTGGCATTGTCTAAGTGCTCGTGTTTTGGTTAATGGCAATCCCTCATTTGAAAATGTTTACGGTGAAGATCTATGGCAGTATACTGCGGAAAATCTTGATCATAGCAAGCTCTTCAATGAAGCTATGGCATGTGATGCTAAGTTTGTTGTGCCTGCTATTATTGAAGGTTGTAGAGAAGCATTTGATGGTGTTAGCACCTTGGTAGATGTGGGTGGAGGGAATGGCACCACCTCCCGCATCCTTGCTAAGGCTTGCCCTCGGATTCAATTGACCAATTTTGATCTTCCTCATGTCATTGCTGCAGCCCCAAAGTGCAATGGAGTGGAACATGTAGCTGGTGACATGTTTCAAAGTGTTCCCAAAGCTGATGCTGTATTTATTAAGTGGGTTTTGCATGATTGGAGTGATGAAGAGTGCATCCAAATCTTAAAGAAGTGCAGAGAAGCTATTCCAAAGGAAAATGGAAGGGTTATTATTGTGGAAGCGGTGATTGAAGAAGGAGGAGAAAAACGTGACAAGTTCAAAGATATAGGATTACTACTGGACATGGTGATGATGGCACACACTAGTTTAGGCAAAGAAAGGACACTAAAAGAGTGGGACTATGTGATTAAAATGGCTGGATTTAGTGCATACACCGTGAAAGCTATCAATGCTGTGCAGTCTGTAATTTTGGCTTTCTCTTGA 1059 0.4202 MSAWEKEEEAKEAHAQVDIWKIICGFVEMAAVKCAIELGIPEAIEKHGSPMTLLELSSTLGCDPSYLNRIMRFLVNRKIFKIIPIKHDSLGYAHTTLSRCLMRNGEHSMASLILMETSPIMLAPWHCLSARVLVNGNPSFENVYGEDLWQYTAENLDHSKLFNEAMACDAKFVVPAIIEGCREAFDGVSTLVDVGGGNGTTSRILAKACPRIQLTNFDLPHVIAAAPKCNGVEHVAGDMFQSVPKADAVFIKWVLHDWSDEECIQILKKCREAIPKENGRVIIVEAVIEEGGEKRDKFKDIGLLLDMVMMAHTSLGKERTLKEWDYVIKMAGFSAYTVKAINAVQSVILAFS. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01523 352 PIRSF O-mtase 1 352 IPR016461 GO:0008168
Seca5g01523 352 Gene3D Vaccinia Virus protein VP39 103 351 IPR029063 -
Seca5g01523 352 Pfam O-methyltransferase domain 125 334 IPR001077 GO:0008171
Seca5g01523 352 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 106 349 IPR029063 -
Seca5g01523 352 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 352 IPR016461 GO:0008168
Seca5g01523 352 CDD AdoMet_MTases 190 284 - -
Seca5g01523 352 PANTHER O-METHYLTRANSFERASE 29 335 IPR016461 GO:0008168
Seca5g01523 352 Gene3D - 2 101 IPR036388 -
Seca5g01523 352 Pfam Dimerisation domain 31 75 IPR012967 GO:0046983
Seca5g01523 352 FunFam O-methyltransferase family protein 3 101 - -
Seca5g01523 352 FunFam O-methyltransferase family protein 103 351 - -
Seca5g01523 352 SUPERFAMILY "Winged helix" DNA-binding domain 11 105 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01523 Seca-Chr5 45595214 45597545 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01523 31 338 Monolignol Biosynthesis Gene Families AT5G54160 37.224 8.55e-66 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01523 K22588 - gmx:100782951 491.886