Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01520 ATGGGAGAAATACAAAGAGAGCCAATGTCAGGATGGGAGAAGAAAGAAGAAGAGGAGGCACATGCACAAGTGGATATTTGGAGATTCATATGTGGATTTGTGGAAATGGCAGTGATGAAATGTGCCATTCAACTTGGCATAGCTGAAGCAATTGAAAGTCACGGAAGCCCCATGACACTATTGGAGCTAGCATCAATACTTGGATGTGATCCTTCATATCTTAACCGTATCATGAGGTTTTTAGTGAACCGAAAGATCTTCAAAACCATACCCATCAAACATGACTCATTAGGCTATGCTCAAACACCATTGTCTCGTTGTTTGATGAGAAATGGTGAACATAGCATGGCTTCTTTAATTTTGTTGGAGTGTAGTCCCATAATGCTAGCACCTTGGCATTGTCTAAGTGCTCGTGTTTTGGTTAATGGTAACTCTTCGTTTGAAAAGGTTCATGGTGAAGATGTGTGGAAGTTTGCTGCGGAAAATCTTGATCATAGCAACCTCATTAATGAAGCTATGGCATGTGATGCTAAGTTTGTTGTGCCTGCTATTATTGAAGGTTGTAGAGAAGCATTTGATGGTGTTAGCACCTTGGTAGATGTGGGTGGAGGGAATGGCACCACCTCCCGCATCCTTGCTAAGGCTTGCCCTCGGATTCAATTGATCAATTTTGATCTTCCTCATGTCATTGCTGCAGCCCCAAAGTGCAATGGAGTGGAACATGTAGCTGGTGACATGTTTCAAAGTGTTCCCAAAGCTGATGCTGCATTTATTAAGTGGGTTTTGCATGATTGGAGTGATGAAGAGTGCATCCAAATCTTAAAGAAGTGCAGAGAAGCTATTCCAAAGGAAAATGGAAGGGTTATTATTGTGGAAGCGGTGATTGAAGAAGGAGGAGAAAAACGTGACAAGTTCAAAGATATAGGATTACTACTGGACATGGTGATGATGGCACACACTAGTTTAGGCAAAGAAAGGACACTAAAAGAGTGGGACGATGTGATTAAAATGGCTGGATTTAGTGCATACACCGTGAAAGCTATCAATGCTGTGCAGTCTGTAATTTTGGCTTTCTCTTGA 1080 0.4176 MGEIQREPMSGWEKKEEEEAHAQVDIWRFICGFVEMAVMKCAIQLGIAEAIESHGSPMTLLELASILGCDPSYLNRIMRFLVNRKIFKTIPIKHDSLGYAQTPLSRCLMRNGEHSMASLILLECSPIMLAPWHCLSARVLVNGNSSFEKVHGEDVWKFAAENLDHSNLINEAMACDAKFVVPAIIEGCREAFDGVSTLVDVGGGNGTTSRILAKACPRIQLINFDLPHVIAAAPKCNGVEHVAGDMFQSVPKADAAFIKWVLHDWSDEECIQILKKCREAIPKENGRVIIVEAVIEEGGEKRDKFKDIGLLLDMVMMAHTSLGKERTLKEWDDVIKMAGFSAYTVKAINAVQSVILAFS. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01520 359 CDD AdoMet_MTases 197 291 - -
Seca5g01520 359 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 27 359 IPR016461 GO:0008168
Seca5g01520 359 SUPERFAMILY "Winged helix" DNA-binding domain 16 112 IPR036390 -
Seca5g01520 359 PIRSF O-mtase 4 359 IPR016461 GO:0008168
Seca5g01520 359 Gene3D - 10 108 IPR036388 -
Seca5g01520 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 356 IPR029063 -
Seca5g01520 359 Pfam O-methyltransferase domain 132 341 IPR001077 GO:0008171
Seca5g01520 359 PANTHER O-METHYLTRANSFERASE 36 342 IPR016461 GO:0008168
Seca5g01520 359 Gene3D Vaccinia Virus protein VP39 110 358 IPR029063 -
Seca5g01520 359 FunFam O-methyltransferase family protein 110 358 - -
Seca5g01520 359 FunFam O-methyltransferase family protein 11 108 - -
Seca5g01520 359 Pfam Dimerisation domain 38 82 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01520 Seca-Chr5 45355547 45357930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01520 39 345 Monolignol Biosynthesis Gene Families AT5G54160 35.759 1.35e-62 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01520 K22588 - gmx:100782951 512.301