LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g01517	ATGCGACCTTCATGGGCTGATTTGGCTGCAAATTCCGCGGCCGAAAATGGACCTTCTTCTGCCAACACTGCAGCTCCTTCACGACCTGTTTACGTTCCTCCGCATCTCAGGAACCGTCCACCACCATCAACAGCAGCAGCAGCAGCAGAATCCCCTGCTCCTCCAGCTTCTTCTGTTTCTGCTTCTGCTTCTGCTTCTGGATCATCATCGCGTTGGGCACCGCCCAGAAACGAGTACCGTGGCCGCACGGGTGGTTGGGGGAACAAAGCTGGTGGTTGGGATAATCGCGGTGGCAGGGACCGTGAAGTCAATCCCTTTGGAGATGATACCGAAGATGCGATTAGTGAGGAGCAGGATAGTAACACGGGGATAAATTTTGATGCATATGAAGACATTCCGGTGGAGACTAGCGGTGAGAATGTGCCCCCACCTGTGAACACGTTTGCAGAAATTGACTTGGGGGAAGCACTTAACCAGAACATAAGGCGGTGCAAATATGTGAAGCCTACGCCTGTTCAGCGGCATGCCATACCGATATCCCTTGGCGGAAGGGATTTGATGGCTTGTGCACAGACAGGTTCTGGAAAAACGGCTGCTTTCTGTTTCCCCATTATCAGTGGAATTATGAGGGGCCAACCTGTGCAAAGGCCACCTCGTGGGGTGCGTACTGTGTATCCACTTGCCCTTGTTCTGTCACCAACTAGGGAGCTGTCAATGCAAATACACGAAGAGGCTAGGAAGTTTTCATACCAGACTGGGGTTAGAGTGGTTGTTGCTTATGGTGGAGCTCCAATAAACCAGCAGCTACGGGATCTTGAGAGAGGGGTAGACATTCTTGTTGCAACTCCAGGAAGACTGGTAGATTTGTTGGAGAGAGCTAGAGTTTCACTACAGATGATCAGATATCTGGCATTAGATGAGGCAGACAGGATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCACCAGGTGTCAGACAGACTATGTTGTTCAGTGCCACGTTTCCTAAAGAGATACAGAGACTAGCCTCTGATTTCCTTGCAAATTATATTTTTCTGGCTGTTGGAAGAGTGGGCTCAAGTACTGATTTAATTGTCCAAAGAGTTGAATATGTTCAAGAGTCTGACAAGAGAAGTCACCTCATGGACCTTCTTCATGCACAGAGGGCAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCTGGAACATTGGTTATGTCGTAATGGTTTTCCCGCAACTACTATTCACGGTGACAGGTCACAACAGGAAAGAGAATCAGCATTAAGGTCATTTAAAAGTGGCAACACCCCCATATTGGTTGCCACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCCCATGTAGTTAACTTTGACCTTCCTAATGATATTGATGATTATGTACACCGTATTGGAAGGACGGGGCGAGCAGGGAAGAAAGGCCTTGCAACTGCATTCTTTAATGACAACAATGCATCCCTAGCAAGGTCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCGCGGTATGCTGCTCGATCTTCCTTTGGTGGAAGGAACCGTCGATCAGGAGGCCGATTTGGTGGTCGTGACTTCCGAAGAGAAAATTCTTTTAATAGGGGTGGTTCTGATTATTACGGTGCTGGAAACAATAGTGGCGGCGGGTATGGGGCTTCTGCTGGGTATGCTGGAGGAGGAGGATACGGTCCTGGGGTAACCAGTGCATGGGACTGA	1821	0.4849	MRPSWADLAANSAAENGPSSANTAAPSRPVYVPPHLRNRPPPSTAAAAAESPAPPASSVSASASASGSSSRWAPPRNEYRGRTGGWGNKAGGWDNRGGRDREVNPFGDDTEDAISEEQDSNTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCRNGFPATTIHGDRSQQERESALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARSLADLMQEANQEVPAWLSRYAARSSFGGRNRRSGGRFGGRDFRRENSFNRGGSDYYGAGNNSGGGYGASAGYAGGGGYGPGVTSAWD.	607

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g01517	606	CDD	DEADc_DDX3_DDX4	147	368	IPR044763	GO:0003724\|GO:0005524
	Seca5g01517	606	Gene3D	-	365	544	IPR027417	-
	Seca5g01517	606	CDD	SF2_C_DEAD	374	510	-	-
	Seca5g01517	606	Pfam	DEAD/DEAH box helicase	170	351	IPR011545	GO:0003676\|GO:0005524
	Seca5g01517	606	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	146	174	IPR014014	GO:0003724
	Seca5g01517	606	SMART	ultradead3	165	377	IPR014001	-
	Seca5g01517	606	Gene3D	-	103	364	IPR027417	-
	Seca5g01517	606	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	177	362	IPR014001	-
	Seca5g01517	606	SMART	helicmild6	420	501	IPR001650	-
	Seca5g01517	606	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	114	540	-	-
	Seca5g01517	606	MobiDBLite	consensus disorder prediction	1	100	-	-
	Seca5g01517	606	FunFam	Probable ATP-dependent RNA helicase DDX4	108	364	-	-
	Seca5g01517	606	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	227	517	IPR027417	-
	Seca5g01517	606	MobiDBLite	consensus disorder prediction	55	73	-	-
	Seca5g01517	606	Pfam	Helicase conserved C-terminal domain	386	501	IPR001650	-
	Seca5g01517	606	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	373	540	IPR001650	-
	Seca5g01517	606	FunFam	ATP-dependent RNA helicase RhlB	365	544	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g01517	Seca-Chr5	45084118	45089978	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g01517	144	533	Eukaryotic Initiation Factors Gene Family	AT3G19760	32.225	9.61e-64	214

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g01517	K11594		-	gmx:100795756	965.681