Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01510 ATGACAAATACCAATACTCTATTGAGAACAAAGATAACAAACTTCATGGTTGGATTAACTTGGACTCCAACTCCGAATGAATCTGTGGGCTTCTGGATGATAACACCAAGTAGTGAGTTCCGTAACGGTGGGCCAACCCACCAAGCCCTTACTTCTCATGTTGGTCCTGTCACTCTCAATACACTTCATACCACTCACTACGCTGGGAAGGAGATAAACATGGCATTTGCAGAAGGGGAGTCTTTCAAGAAAGTTTATGGCCCCTTTTTTGTGTATCTGAACAAAGGAGATTCACAAGCCCTCTGGTCTGATGCTGCACAACAGCTGTCTGAGGAAATCAAAAGCTGGCCCTATGATTTCCCTAAATCAGATGATTTTTTCAAACACAACAAACGGGGGTACATTAACGGAGGGAGATTTCTATATGGCAACAATGCTTATGTTGGTCTGGCTCTGCCTGGAGATTTAGGATCATGGCAAAGACAATGCAAGGGTTACCAATTTTGGACTCAAGCTGACAAGATAGGTCAATTCACAATTGAAAACATCGTACCGGGGGACTACAATTTGTATGCATGGGTTCCTGGCATTTTTGGGGATTACATATATAACACTACTATAACAATCACACCAGGATGTGTCATCCAATTGGGTTCCCTAATATTCAGTCCTCCAAGAAATGGACCTACCATATGGGAAATTGGCATCCCAGATCGCTCTGCAGCAGAGTTTTATGTTCCAGATCATTATCCTAACCTTGTCAACCGAGTATACATTGGGAAACCAGAACACAAGTTTAGGCAATATGGACTATGGCGGCGTTACACTGAGTTATATCCAAATCAAGACCTCGTTTATAATGTCGGTGTTAGTGATTATCGTAAAGATTGGTTTTATGCTCAGGTTACCAGGAACATAGGAAACAACACATTTCGCCCAACCACATGGGAGATTAGATTTCATCTACCATTTGTTATAAGAGGAAACTACACTCTACAACTTGCCTTGGCCTCAGCCGCAAGTTCTACCTTAGTGGTTCGGTTCAATAACCCTGTGGCTATTCCTGCGCACTTCTCTACGGGACTGATAGGCCAAGACAATGCCATAGCAAGACATGGCATCCATGGATTGCACCGGCCTTACAACATTGAAGTACCAAGCCATCTATTGGTAGAAGGAAACAACATAATCTATCTGAGGCAGACCAAAGGTGTAACTCCTTTCCAAGGAATTATGTATGACTACATCCGTTTGGAAAGTCCTGGAACTTGA 1272 0.4285 MTNTNTLLRTKITNFMVGLTWTPTPNESVGFWMITPSSEFRNGGPTHQALTSHVGPVTLNTLHTTHYAGKEINMAFAEGESFKKVYGPFFVYLNKGDSQALWSDAAQQLSEEIKSWPYDFPKSDDFFKHNKRGYINGGRFLYGNNAYVGLALPGDLGSWQRQCKGYQFWTQADKIGQFTIENIVPGDYNLYAWVPGIFGDYIYNTTITITPGCVIQLGSLIFSPPRNGPTIWEIGIPDRSAAEFYVPDHYPNLVNRVYIGKPEHKFRQYGLWRRYTELYPNQDLVYNVGVSDYRKDWFYAQVTRNIGNNTFRPTTWEIRFHLPFVIRGNYTLQLALASAASSTLVVRFNNPVAIPAHFSTGLIGQDNAIARHGIHGLHRPYNIEVPSHLLVEGNNIIYLRQTKGVTPFQGIMYDYIRLESPGT. 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01510 423 Gene3D - 131 217 - -
Seca5g01510 423 Gene3D - 227 419 - -
Seca5g01510 423 SUPERFAMILY Galactose-binding domain-like 227 419 IPR008979 -
Seca5g01510 423 CDD RGL4_M 133 220 IPR029413 -
Seca5g01510 423 SUPERFAMILY Starch-binding domain-like 162 218 IPR013784 GO:0030246
Seca5g01510 423 CDD RGL4_C 232 419 - -
Seca5g01510 423 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 26 421 - -
Seca5g01510 423 Pfam Polysaccharide lyase family 4, domain III 230 418 IPR029411 -
Seca5g01510 423 Pfam Polysaccharide lyase family 4, domain II 144 216 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01510 Seca-Chr5 44745647 44749506 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01510 21 421 Polysaccharide Lyase AT1G09890 54.916 7.53e-161 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01510 K18195 - gmx:100792575 685.256