Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01487 ATGACAGCAAGGGAGAAGGAACAAGAAGCAGAAGAGGCACATGCACAAGTTGATATCTGGAAAATCATATGTGGATTTGTGGAAATGGCAGCGGTGAAATGTGCCATTGAACTTGGCATACCTGAAGCCATTGAAAAGCACGGAAGCCCCATAACACTATTGGAGCTATCATCAACACTTGGATGTGATCCTTCATATCTTAACCGCATCATGAGGTTCTTAGTGAACCGAAAGATCTTCAAAACCATACCCATCAAACATGACTCTCTAGGCTATGCTCTCACACCATTGTCTCGCTGTTTGATGAGAAATGGTGAACATAGCATGGCTTCTTTAATTTTGTTGCAGACTAGTCCCATAACGCTAGCACCTTGGCATAGTCTAAGTGCTCGTGTTTTGGTTAATGGGAATCCCTCATTTGAAAAGGTTTACGGTCAAGATCTATGGCAATATGTTGCGGAAAATCATGATCATAGCAACCTCTTTAATGAAGCTATGGCATGTGATTCTAAGTTTGTTGTGCCTGCTATTATTGAAGGTTGTAGTGAAGCATTTGATGGTGTTAGCACCTTGGTGGATGTGGGTGGAGGGAATGGCACCACCTCTCACATCCTTGCTAAGGCTTGCCCTTGGATTCAATTGATTAATTTTGATCTTCCTCATGTTATTGTTGCAGCCCCAAAGTGCAATGGGGTGGAATATGTAGCAGGTGACATGTTTCAAAGTGTCCCAAAAACTGATGCTGCATTTCTTAAGATTGAGATTTGGCTAATTGATTTGTTACTATTGAAGTGGATTTTGCATGACTGGAGTGATGAAGAGTGCATCCAAATCTTGAAGAAGTGTAGAGAAGCTATTCCAAAGGAAAATGGAAGGGTTATTATTGTGGAAGCGGTGATTGAAGAAGGAGAAGGAAAACATGACAAGTTAAATGATACAGGATTACTATTGGACATGGTGATGATGGTACACACTTCAGGCAAAGAAAGGACACTGAAAGAGTGGGACTATGTGATTAAAATGGCTGGATTTAGTGCATACACCGTGAAAGCTATCAATGCTATGCAATCTGTAATTCTGGCTTTCTGTTGA 1092 0.4112 MTAREKEQEAEEAHAQVDIWKIICGFVEMAAVKCAIELGIPEAIEKHGSPITLLELSSTLGCDPSYLNRIMRFLVNRKIFKTIPIKHDSLGYALTPLSRCLMRNGEHSMASLILLQTSPITLAPWHSLSARVLVNGNPSFEKVYGQDLWQYVAENHDHSNLFNEAMACDSKFVVPAIIEGCSEAFDGVSTLVDVGGGNGTTSHILAKACPWIQLINFDLPHVIVAAPKCNGVEYVAGDMFQSVPKTDAAFLKIEIWLIDLLLLKWILHDWSDEECIQILKKCREAIPKENGRVIIVEAVIEEGEGKHDKLNDTGLLLDMVMMVHTSGKERTLKEWDYVIKMAGFSAYTVKAINAMQSVILAFC. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01487 363 Gene3D - 2 101 IPR036388 -
Seca5g01487 363 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 363 IPR016461 GO:0008168
Seca5g01487 363 FunFam O-methyltransferase family protein 3 101 - -
Seca5g01487 363 Gene3D Vaccinia Virus protein VP39 103 362 IPR029063 -
Seca5g01487 363 PIRSF O-mtase 1 363 IPR016461 GO:0008168
Seca5g01487 363 FunFam O-methyltransferase family protein 103 362 - -
Seca5g01487 363 Pfam Dimerisation domain 31 75 IPR012967 GO:0046983
Seca5g01487 363 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 106 360 IPR029063 -
Seca5g01487 363 CDD AdoMet_MTases 190 296 - -
Seca5g01487 363 Pfam O-methyltransferase domain 125 345 IPR001077 GO:0008171
Seca5g01487 363 PANTHER O-METHYLTRANSFERASE 29 346 IPR016461 GO:0008168
Seca5g01487 363 SUPERFAMILY "Winged helix" DNA-binding domain 8 105 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01487 Seca-Chr5 44156034 44167165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01487 31 349 Monolignol Biosynthesis Gene Families AT5G54160 35.866 1.13e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01487 K22588 - gmx:100782951 471.47