Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01480 ATGATAGTTGATTTAAATTTTATGCCTACTAACAAGTTCATTTGGGGGAAATCTATAAATACATGCTTGGGTTGGGTGTTTGTGATTACTTTGTTCCCCTGCATTTTTCTGAGTGATTACTTCCACCAATTAAAAATGGCTATGGTGCCTTCGCATTTCCATTCAATAAAATCTCTGTGTGGGCTTCGACAAAATTGGAGGTTGAGGGTGAAATTGGTTAGGGTGTGGAACATGGACTCCATAGCTACTCCAAATGACCCCTTTTCCACCCAAATGGTTTTGATTGATGAAGAGAGTGATGCGATAAAGAAAACCAATGGTCGATCGGAATACCTAATAGATTTCATGGGCATCGTCACTGCCGTTTCAGAGGAAATCAACTTGAGCAAGGAGGGCAGGGAGACACAGCTCATGCTAATTGATTTAGTGGATGAGATGGGACAAATACGGTTGGCTTTATTTGGAGACATGATAGATGTGGTTGCTGGATATCTTGGTCTCCCTCGATGTGGCTTGCCTGTTCTTATAATACAATTAGCCAAGGTTAATCTTTACAAAGGGGAAGTTGGGATCCAGAATGTCATGAACGCGTCAAAGGTTTATTGGAACCCGGATATGCCTGAGGCTCTAGAGTTTAGGAATGGATTGAAACTGATGGACATTCGAACTATATCTGAAACGAGGCGCCCTGCTTCAATGAAAGATGATTTCCTTAAATTATATCCAAAAAGGATTATGGAACAACTGCACCAAATGGAAGAGGATGGCTTCTTTGTAATTATGGGCACAGTTGAACAGGTTATCGAAGATGGATTCTGGTGGTATATGGCCTGTCCTTGCATGAAATTTGTATCCTATGATTATGGGGTTCCGTTTTGTGATGATTGTGGTGTCTATGTCATTGATCTCACTCCCAGGTTCAAGCTGAAAACTGAGGTCTCTGATGCAACAGACACTGCTCACCTGATTTTGTTTGACTCAGAGTGTTATGCAATGCTTCACAAGTCCTGTCGTGACACGTTAGCTAAGATGAAGAGTGTAAAGAATTGTGATCATCCTTCGGATATCTCTAACCTGGTTGGGAGTGAGTTTCTCTTTCGAGTAGAGCGAAAGAATCATGCTTCATTCACCTTTGAGGAATGCTTCCGAGTTAAGAGGGTGTGCTCTGATCCAAGTATAATTGCTGATTATAAAATTGGAATTGATGAGGAAACTCCATTGAAGCTGAAGTTTGCTCCTTTGTTTACCAAAATTATTGATGAGGAGCGACCAACTGTGTGA 1281 0.4122 MIVDLNFMPTNKFIWGKSINTCLGWVFVITLFPCIFLSDYFHQLKMAMVPSHFHSIKSLCGLRQNWRLRVKLVRVWNMDSIATPNDPFSTQMVLIDEESDAIKKTNGRSEYLIDFMGIVTAVSEEINLSKEGRETQLMLIDLVDEMGQIRLALFGDMIDVVAGYLGLPRCGLPVLIIQLAKVNLYKGEVGIQNVMNASKVYWNPDMPEALEFRNGLKLMDIRTISETRRPASMKDDFLKLYPKRIMEQLHQMEEDGFFVIMGTVEQVIEDGFWWYMACPCMKFVSYDYGVPFCDDCGVYVIDLTPRFKLKTEVSDATDTAHLILFDSECYAMLHKSCRDTLAKMKSVKNCDHPSDISNLVGSEFLFRVERKNHASFTFEECFRVKRVCSDPSIIADYKIGIDEETPLKLKFAPLFTKIIDEERPTV. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01480 426 SUPERFAMILY Nucleic acid-binding proteins 248 388 IPR012340 -
Seca5g01480 426 Pfam Replication factor-A C terminal domain 257 373 IPR013955 -
Seca5g01480 426 CDD RPA1_DBD_C 247 387 IPR047192 -
Seca5g01480 426 PANTHER OS03G0429900 PROTEIN 196 377 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca5g01480 426 Gene3D - 96 220 IPR012340 -
Seca5g01480 426 SUPERFAMILY Nucleic acid-binding proteins 105 216 IPR012340 -
Seca5g01480 426 CDD RPA1_DBD_B_like 114 217 - -
Seca5g01480 426 Gene3D - 231 390 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01480 Seca-Chr5 43867114 43870986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01480 106 325 Core DNA Replication Machinery Family AT2G06510 24.790 6.18e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01480 - - lja:Lj3g3v3527180.1 263.462