Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01478 ATGGCGGGAAACCATTTTCCTGTGGGTATGCGTGTTCTTGTTGTTGACGGTGACGAAACTAGTCTTAAATTGTTGGAGAACCTGCTTCACAAATGCCAGTATCATGTTACTACAACTATTCAGACAATTAAGGCGCTAGAAATATTGAGGAAAAAAGAAAATGAGTTTGAGCTTGTTATTAGTGATGTAAACATGACAGATATGGATGGTTTTAAATTTTTTGAACAAGTGGTACTTGAGATGGACTTACCAGTGATCATTAGAATTGAAGTGTTGTGCAATATATGGCAACATGTTGTAAGGAAAAAGATTAATTGGAAGGATCGAAATATGGCTGCTAATAAAGAAAAAATCTACAATATGGTTGGGAAAGATATTCAAAGTATCATCACATCATACAACAATATTGACTCTAATAAATTGGTGGGTAAAAAGTGGAGGAAACAAAATGAGCAAAAGGAAGACCATGATAAAGAGAATGGAGAGGAGAATGAGGAAGTCTCAACTAGGAAGAAGCCTCGTTAG 525 0.3562 MAGNHFPVGMRVLVVDGDETSLKLLENLLHKCQYHVTTTIQTIKALEILRKKENEFELVISDVNMTDMDGFKFFEQVVLEMDLPVIIRIEVLCNIWQHVVRKKINWKDRNMAANKEKIYNMVGKDIQSIITSYNNIDSNKLVGKKWRKQNEQKEDHDKENGEENEEVSTRKKPR. 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01478 174 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 87 IPR045279 GO:0009736
Seca5g01478 174 Gene3D - 8 147 - -
Seca5g01478 174 ProSiteProfiles Response regulatory domain profile. 11 174 IPR001789 GO:0000160
Seca5g01478 174 Pfam Response regulator receiver domain 12 87 IPR001789 GO:0000160
Seca5g01478 174 SUPERFAMILY CheY-like 9 87 IPR011006 -
Seca5g01478 174 MobiDBLite consensus disorder prediction 146 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01478 Seca-Chr5 43818438 43819563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01478 2 152 Response Regulator Gene Family AT2G25180 48.023 3.66e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca5g01478 Response_reg 1.3e-10 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01478 K14491 - gmx:100776075 176.022