Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01475 ATGGCATTCTGTAGTAAGGTTGGAAACCTCTTGAGGCAGAGTGCTCCTCAGAGCAGACAAGTACCTGTTGCATCCATGCTTAATTACATTCGCTCCATGTCTTCATCCAAGCTTTTCATTGGAGGCCTTTCATACGGAGTTGATGACCAGTCTCTTAGAGATGCATTTGCAAGCTTTGGAGATGTGGTTGAGGGTGAGTTCAGCTTGCTTTATTCAAGGGTTATCACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCTCCACTGATGAGTCAGCAAGTTCAGCACTATCTGCCATGGATGGACAGGATCTCAATGGGCGAAACATTCGGGTGTCCTATGCAAATGATAGACCTTCTGGACCTCGATCTCCTGGTGGTGGTTATGGTGATGATTCTCGTAGGGGTGGTTGGTGA 429 0.4639 MAFCSKVGNLLRQSAPQSRQVPVASMLNYIRSMSSSKLFIGGLSYGVDDQSLRDAFASFGDVVEGEFSLLYSRVITDRDTGRSRGFGFVNFSTDESASSALSAMDGQDLNGRNIRVSYANDRPSGPRSPGGGYGDDSRRGGW. 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01475 142 MobiDBLite consensus disorder prediction 102 142 - -
Seca5g01475 142 SUPERFAMILY RNA-binding domain, RBD 27 140 IPR035979 GO:0003676
Seca5g01475 142 CDD RRM2_NsCP33_like 37 119 - -
Seca5g01475 142 SMART rrm1_1 37 117 IPR000504 GO:0003723
Seca5g01475 142 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 115 IPR000504 GO:0003723
Seca5g01475 142 Gene3D - 13 142 IPR012677 -
Seca5g01475 142 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 121 IPR000504 GO:0003723
Seca5g01475 142 PANTHER GEO13361P1-RELATED 24 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01475 Seca-Chr5 43730925 43732972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01475 35 124 Eukaryotic Initiation Factors Gene Family AT1G49760 40.000 3.06e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01475 - - gmx:100499841 183.726