Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01471 ATGGGATCAACCAATTATGGAGTATCAGTGGATTTGTGGAGTGTTGGCTGTGTATTTGTAGAACTTTTTCTGGGGAAACCTATCCTTAAGGGGAGAATAAGGTAA 105 0.4 MGSTNYGVSVDLWSVGCVFVELFLGKPILKGRIR. 35
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01471 34 ProSiteProfiles Protein kinase domain profile. 1 34 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01471 34 Gene3D Transferase(Phosphotransferase) domain 1 1 32 - -
Seca5g01471 34 SUPERFAMILY Protein kinase-like (PK-like) 2 31 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01471 Seca-Chr5 43642913 43643017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01471 1 32 Core Cell Cycle Gene Families AT5G64960 59.375 7.35e-11 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca5g01471 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01471 - - gmx:100787268 68.5514