Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01466 ATGGAAGGGTCTGGATCAGGTGGCGGCGCGGCACCGTTTCTACTGAAAACGTACGAGATGGTGGAGGATTCATCAACGGACGAGATCGTTTCATGGAGTGCTGAAACCAATAACAGTTTCATCGTTTGGAGCCCCGCTGATTTCTCTCGTATTCTTCTTCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGTCAGCTTAATACCTATGGATTTCGAAAAATACATTCTGAGCGATGGGAATTTGCTAATGAAGATTTTGTGAAAGGTCAAAAGCACCTTCTTAAGAATATTCACCGCAAGAAACCTATTCACAGTCACAGTCATCCTCCTTCAGGATCTCATGTGGATCCAGAGAGGTCAGCATTTGAGGAAGAAATCGAGAAACTTTCACATGAGAAAACTACTATTGAATCCAGTATTTCTGGCTTCAAGCAACACCTGTCAGCTGCAAAGCTTCATGTGGAAGATCTACGGCAGCGTTTAGATGGCATGGAGAAGAGGCAGAAGAATTTGCTGAACTTGTTCGAAAGGGCTCTTCAGAATCCTACTTTTATTGAACAAATTTCACAGAAAATTGAGTCCATGGATTTGTTGGGATATAACAAGAAAAGGAGATTGCCTCCGGTTGATCACTTGCAGCCTGTTGCTGAGAATAATTTTGTTGAGAATAATAGCAGTTTTGGAATGGAATCTGGAAACTTTTTCCATCAAGATTTCTCAAATAAACTCAGGCTGGAATTGTCACCAACAGTTTCAGATATCAACTTGGTATCATGTAGTACACATAGTTCAAATGAAGATGGAGAAAGCCTGCAAAAGATGCTATGTGAAGGTGAACCAAAAGAAGTGCAGACAACAAAAGCTCTTGGATTTGCACCTGAACCATTAGAGAATGCAGATATTGGAGCATCTTTTACTCTTGAGATGGATTCATATTTATCAAGAAAATCAACAGCTGCTGAGAGCTCAAAACTGCACTCCTTGGAACCAAATAGTGAGGAAGATGATACTCATATATCCTGCCTTTTAAATCTAACTCTGGCATCTTCTCCATTGCAAGTGAAGAGAGATTCATACGCAGATACATCACCCCAAATAGACTGTCAAGAAATTGGTAAACTGGTAGAATCAAGATTTTATGCCAATGATAAAGAATCCAATGGTGAAGCTTCTTCAAACAGGAATCTGGCTAATGAGGCTACTAATTTAGCTTCCTCACAAGAGGTTCCTAGTAACAACCATGGGACCCCAGCTGCTCCAGTTAGAGTAAATGATGTGTTTTGGGAACAGTTCCTTACAGAAAGACCAGCCTATTCAGACAATGAAGAGTCAATATCCAACTACAAAGCAAATGCCTATGCCAAGCAAGATGAAGGGCAGTCAGTTCATGGAATCTCTGGAAGCATTATGAATATGGATCAGCTCAAACTTTGA 1443 0.4082 MEGSGSGGGAAPFLLKTYEMVEDSSTDEIVSWSAETNNSFIVWSPADFSRILLPTYFKHNNFSSFIRQLNTYGFRKIHSERWEFANEDFVKGQKHLLKNIHRKKPIHSHSHPPSGSHVDPERSAFEEEIEKLSHEKTTIESSISGFKQHLSAAKLHVEDLRQRLDGMEKRQKNLLNLFERALQNPTFIEQISQKIESMDLLGYNKKRRLPPVDHLQPVAENNFVENNSSFGMESGNFFHQDFSNKLRLELSPTVSDINLVSCSTHSSNEDGESLQKMLCEGEPKEVQTTKALGFAPEPLENADIGASFTLEMDSYLSRKSTAAESSKLHSLEPNSEEDDTHISCLLNLTLASSPLQVKRDSYADTSPQIDCQEIGKLVESRFYANDKESNGEASSNRNLANEATNLASSQEVPSNNHGTPAAPVRVNDVFWEQFLTERPAYSDNEESISNYKANAYAKQDEGQSVHGISGSIMNMDQLKL. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01466 480 Coils Coil 150 184 - -
Seca5g01466 480 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 303 IPR027725 -
Seca5g01466 480 Pfam HSF-type DNA-binding 13 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g01466 480 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g01466 480 Gene3D - 8 104 IPR036388 -
Seca5g01466 480 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g01466 480 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g01466 480 PRINTS Heat shock factor (HSF) domain signature 13 36 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g01466 480 FunFam Heat shock transcription factor 1 6 104 - -
Seca5g01466 480 SUPERFAMILY "Winged helix" DNA-binding domain 10 103 IPR036390 -
Seca5g01466 480 SMART hsfneu3 9 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g01466 480 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01466 Seca-Chr5 43569702 43572593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01466 13 480 HSF AT4G13980 49.895 1.31e-144 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca5g01466 HSF_DNA-bind 4e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01466 K09419 - gmx:100786408 661.759