Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01463 ATGCCATTGCCAGCAGTTCAAAACCAGAAAAACATGTTGCAAGACAACTCACTGACGATAACAATGTCAATCCTGGGTTTCATAAGCATTGACTGTGGATCAAACGTAGACTACTTGCATGAGGAAACTGGAATCTGGTATCAGACAGATAAAAATTTTGTGGAAACTGGAATGAATCATGTGGTTCCACCGAGAACCAATTTAAACTATGACTACTTTGGGAGACAATTGACCACATTGAGAAGTTTTCCAGATGGAGACAGAAACTGCTACACCTTGAAACCTAAACAGGGCAAAAATAATAGTTATTTAATTAGGGCTTTCTTTGCCTATGGAAATTATGACTTCAAAAATGAAACCCCATCTTTCGACTTGTATATTGGGGTAAATTACTGGGACACCATTGGTTTCAATGATTACTACTACTTTACTGAGATTATTCACACCCCCTTAACCGACATCATACATGTCTGTCTTGTAAAGACTGGTCCAACAATACCTTTCATTTCTTCATTAGAATTACGACTTTTGAACAGTTCCATTTATCAAATTCCGATCATGTCCAACAGTACTCCACAACCACAGTTAAAGCTTGAGACAAGGCTTAATTTTGGGGCTCCTTCATATCCTTTACATAACAGGTACAAGGATGATGTATATGATCGGATATGGCGCTGCTATGAAGAAGCAGATAATAAATCATGGGCTCCCTTGTTCTTGGATGAATCAATGGATACTAAGCCTGCAAGGAAAGTTGGTGCTATTTTGGACATCAAAAGAACCTACCACATCTCCAAGTTAACTTGGCAAGGAGATCCATGTGTTCCAAAACAATATGCATGGGAGGGCATCAATTGCAGTTCTGATACCAATCCAAGGATCACATCTTTGAACCTGAGCTCAAGCAAACTGGCAGGAATGATAAGTACTTCATTCTCATATCTTACAGAGCTAGAATTCTTGGATTTGTCAGACAATGAGTTGGAAGGACCTTTGCCTGAATTTCTGGCAGAATTAACAAATTTGAAAACTCTAAATATAGGAGGGAATAAGCTATCAGGGTCTATTCCTGCAAAACTAATTGAGAGATCGAGGAATGGGTCACTTACATTAAGGGTGGATGGAAATCCATATCTTTGCACCTCGAATCCATGCCACCAGAGGAGTAAGATAGTCATTCTGTTGATAGTAATACTTGTTGGAGCTTTCATCCTTTCTGCTGTATTAGTCTTTATTTTCATAAGACTACAAGTTGCCATCCGTATAAACAAGTCAAGTTCAAACAAAATCAATCGTGGGGACTCAAATAAACAAGAGTTCAGCTACTCGGAGGTTTTAAGTATTACCAATAACTTTGAGAGGGTTTTGGGTAAAGGAGGATTTGGAACTGTCTACCATGGTTGCGTAGGTGAAACACAAGTGGCAGTGAAGATGCTCTCTCATTCATCTCAAGGTTTTCAACAATTTCTGACAGAGGCGAAAATTCTCACTATAGTACACCATAAATGCTTGACTCCTCTTATTGGATATTGTAATGAAGGCACTGCACTCATCTATAAATACATGCCCAACGGAAACTTGGCAAAGCATCTTTCAGATAAGAATCAAATTTCGCTTGGTTGGAAACAAAGACTTCAAATTGCTCTGGATTCTGCAGTAGGTTTGGAATATCTACATAATGGTTGTACCCCCCAAATTGTACATAGAGATGTTAAGACTAGCAACATTTTACTTGATGAAGATTTTCGTGGTAAAATATCAGATTTTGGGTTATCAAGAATCTTTTCTGATGAATGTGACACCCATGTGTCAACAATAATTGCTGGCACCCCTGGTTATCTCGATCCTGAATACTACAAAACAAACAAGTTGACTGAAAAGAGTGATGTATTTAGTTTTGGAATTGTTCTCTTAGAAATAATCACAGGGCAGCCTGTTATATTAAAAACTCATGAGAACACTCACATAATTCAATGGGTAAGTTCCATATTAGATGTTAAAAGAGAAATTGATACTATTATAGATTCAAGGTTACAAGGAAGATATGACATAGAGACTGCAAAGAAAGTCCTACATGTTGCAATGGCTTGTGTAGCTACGACTTCTATTCACAGGCCAACAATGAATCAAGTGATGATAGAATTAAGTCAATGTTTGTCCATGGAGAATATTAGCAGTACATCCAATGAAACATCGATGGAGCCTATCAGTGGAGAGAGTTCTCTTGCAAGGTAG 2235 0.3799 MPLPAVQNQKNMLQDNSLTITMSILGFISIDCGSNVDYLHEETGIWYQTDKNFVETGMNHVVPPRTNLNYDYFGRQLTTLRSFPDGDRNCYTLKPKQGKNNSYLIRAFFAYGNYDFKNETPSFDLYIGVNYWDTIGFNDYYYFTEIIHTPLTDIIHVCLVKTGPTIPFISSLELRLLNSSIYQIPIMSNSTPQPQLKLETRLNFGAPSYPLHNRYKDDVYDRIWRCYEEADNKSWAPLFLDESMDTKPARKVGAILDIKRTYHISKLTWQGDPCVPKQYAWEGINCSSDTNPRITSLNLSSSKLAGMISTSFSYLTELEFLDLSDNELEGPLPEFLAELTNLKTLNIGGNKLSGSIPAKLIERSRNGSLTLRVDGNPYLCTSNPCHQRSKIVILLIVILVGAFILSAVLVFIFIRLQVAIRINKSSSNKINRGDSNKQEFSYSEVLSITNNFERVLGKGGFGTVYHGCVGETQVAVKMLSHSSQGFQQFLTEAKILTIVHHKCLTPLIGYCNEGTALIYKYMPNGNLAKHLSDKNQISLGWKQRLQIALDSAVGLEYLHNGCTPQIVHRDVKTSNILLDEDFRGKISDFGLSRIFSDECDTHVSTIIAGTPGYLDPEYYKTNKLTEKSDVFSFGIVLLEIITGQPVILKTHENTHIIQWVSSILDVKREIDTIIDSRLQGRYDIETAKKVLHVAMACVATTSIHRPTMNQVMIELSQCLSMENISSTSNETSMEPISGESSLAR. 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01463 744 Gene3D Transferase(Phosphotransferase) domain 1 522 739 - -
Seca5g01463 744 SMART serkin_6 450 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01463 744 MobiDBLite consensus disorder prediction 724 744 - -
Seca5g01463 744 SUPERFAMILY Protein kinase-like (PK-like) 432 714 IPR011009 -
Seca5g01463 744 Coils Coil 744 744 - -
Seca5g01463 744 SUPERFAMILY L domain-like 278 360 - -
Seca5g01463 744 FunFam Leucine-rich repeat receptor-like kinase 250 382 - -
Seca5g01463 744 ProSiteProfiles Protein kinase domain profile. 450 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01463 744 Pfam Protein tyrosine and serine/threonine kinase 452 713 IPR001245 GO:0004672|GO:0006468
Seca5g01463 744 Gene3D Phosphorylase Kinase; domain 1 432 521 - -
Seca5g01463 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 566 578 IPR008271 GO:0004672|GO:0006468
Seca5g01463 744 ProSitePatterns Protein kinases ATP-binding region signature. 456 477 IPR017441 GO:0005524
Seca5g01463 744 Pfam Malectin-like domain 30 247 IPR024788 -
Seca5g01463 744 Pfam Leucine rich repeat 292 352 IPR001611 GO:0005515
Seca5g01463 744 PANTHER OS07G0107800 PROTEIN-RELATED 250 722 - -
Seca5g01463 744 Gene3D Ribonuclease Inhibitor 252 375 IPR032675 -
Seca5g01463 744 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 522 728 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01463 Seca-Chr5 43446131 43466191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01463 252 723 Receptor kinase-like Gene Family AT1G51850 48.303 1.22e-156 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Seca5g01463 PK_Tyr_Ser-Thr 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01463 - - gmx:100781084 666.766