Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01445 ATGGCTGAACCAAAATTAAAATTGAAAACCCTAGTTTCTCTCTCTAGGCTCTTGTTCTGTCTCTCTCTCCTCTGCTCCACCGCCATTGCCGACGATGGCGCGTTCATGTCGAAGCTCGCGAAAGCCCTGAGTCCAACTCCGTCAGGGTGGTCGACGACCGGTGGCGGCGGTTTCTGTAACTGGAAAGGCGTGAAATGCGACGGATCGAACAGTGTGACCTCGATTGACTTGCATTCCATGTCACTCAGTGGAACACTACCTTCCGATCTGAACTCGCTCTCTCAACTCACCTCCCTCTCTCTCCAGGGAAACTCTCTCCACGGTGCGATACCTTCCTTGGCGAATCTCACAAATCTCCAAACCGTGTTTCTCGACGGTAACAACTTCACCTCTGTTCCCGATGGTTGCTTCCAAGGGCTGAATAGTTTGCAGAAACTTAGCATGACAGACAGCATCAACCTCGCTCCATGGACGATTCCCACCGAGTTGACTCAGTCCACCAACCTCGTTGAGCTTGACCTCGGAAACACAAACCTCATTGGCACCGTGCCGGATATTTTCGGTCCTTTGGTCAGTTTGCAGGGCCTTCGTCTCTCCTACAACAACCTCACCGGGGATTTGCCCAAATCCTTCGCTGGATCTGGGATTCAGAATTTGTGGCTCAACAATCAGAAAGATGGGTATGGTTTTACTGGTTCCATTGACATGCTTGCTTCCATGACTCACTTATCTCAGGTGTGGCTCCAGAAGAACAAGTTCACTGGTCCCATTCCTGATTTGTCAAACTGCACCGGTTTGTTTGATCTGCAGCTTCGTGACAATCAATTAACTGGTGTGGTTCCACCTTCTTTGATGACTCTCTCTAGCTTGCAGAACGTTTCCTTGGACAACAACAGGTTGCAGGGTCCTTTTCCCTCGTTTGGGAAAGGGGTGAAGGTCGACCCTCTTAAAGGGATCAATAGCTTTTGTCAAAACACTCCTGGACCTTGCGATTCGAGGGTCACGACATTGCTTGATATTGCCAAAGATTTTGGGTACCCTCTTCAGTTGGCCACTTCCTGGACAGGGAACGATCCTTGTAATGATTGGAGCTTCATTGTGTGTTCTGGAGGGAAGATTATTACGGTGAATTTAGTAAAGCAGAATTTGACGGGAACAATTTCACCTGCATTTTCCAATTTAACTGATTTGAGGAACCTGCATCTGAATGATAACGATTTGAGTGGTTCGATACCTGAGAGCTTGACTAATTTGGCTCAACTTGAGGTTCTGGATGTGACTAATAACAACCTATCTGGTGAGGTTCCCAAATTCTCAGCTAAGGTGAATTTCAAATCTGCAGGGAATGTTTTGCTTGGGCGTTCTGGGGGTGGTGGAGGCGGTGGAACCACTCCATCATCGGGTTCTGGTGATGCACCCAGTGGAAGTCCTTCTGCAAATGCAAGTGGTTCTTCGCTCTCACCTGCTTGGATCGCAGGTATAGCCATTATTGCTGTATTTTTCGTTGCAGTGGTGTTGTTTGTCTTTTGTAAGTGTTATGCCAAAAACCGCCGGCATGGGAAGTTCGGAAGGGTTAATAATCCTGAAAATGGAAAAGGAGAAGTTAAAATTGATATGATGAGTGTTTCCAATTCCAATGGATATGGTGGAGTTCCAAGCGAGATACAGAGCCAGGGCAGTGAGCGCAGTGACATTCCTGTTTTTGAGGGTGGAAATGTTACAATTTCAATCCAAGTTCTTAGGCAAGTAACCGATAATTTTAGTGAAGATAACATTTTGGGTAGGGGAGGATTTGGGGTTGTTTATAAAGGGGAATTGCATGATGGGACTAAAATTGCAGTGAAGAGGATGGAATCTGTTGCAGTGGGAACTAAAGGAATGAATGAATTTCAAGCAGAGATTGCAGTTCTAAGTAAAGTTAGGCATAGACATTTGGTTGCTCTTTTAGGATATTGCATAAATGGCAATGAAAGGCTTTTGGTGTATGAGTACATGCCTCAAGGAACATTAACACAACATTTGTTTGATTGGCGTGAAAATGGATGTGCTCCTTTGACTTGGAAACAAAGGGTTGCAATAGCTTTGGATGTAGCAAGGGGAGTGGAATACCTGCACAGCTTAGCTCAGCAAAGTTTCATTCACAGGGACTTAAAACCCTCAAACATACTATTGGGTGATGACATGAGAGCAAAGGTTGCAGATTTTGGATTGGTAAAAAATGCACCAGATGGAAAGTATTCTGTCGAGACACGGTTGGCTGGAACATTTGGTTATCTGGCACCTGAATATGCAGCTACTGGAAGAGTAACAACCAAAGTAGATGTTTACGCATTTGGAGTAGTTCTGATGGAGCTGATTACAGGTAGAAGGGCATTGGACGATACTATGCCTGACGAAAGGTCTCACTTGGTTTCATGGTTCCGTAGGGTACTAATTAACAAGGAGAACATCCCTAAGGCAATTGATCAAACACTCAACCCTGATGAGGAAACCATGGAGAGCATATATAAAGTGGCTGAGCTGGCAGGCCATTGCACTGCTCGTGAACCATACCAAAGGCCAGATATGGGGCATGCAGTGAATGTCTTGGTTCCTATGGTAGAGCAATGGAAGCCTACCAGCCATGAAGAAGAAGAAGGTTATGGCATTGACCTTCACATGAGCCTTCCTCAAGCTCTGCGAAGATGGCAAGCCAATGAAGGCACTTCCACAATGTTTAATGACATGTCCTTCTCACAAACCCAATCAAGCATTCCCGCAAAACCTTCAGGATTTGCTGACTCCTTTGATTCAATGGATTGCCGGTAA 2808 0.4573 MAEPKLKLKTLVSLSRLLFCLSLLCSTAIADDGAFMSKLAKALSPTPSGWSTTGGGGFCNWKGVKCDGSNSVTSIDLHSMSLSGTLPSDLNSLSQLTSLSLQGNSLHGAIPSLANLTNLQTVFLDGNNFTSVPDGCFQGLNSLQKLSMTDSINLAPWTIPTELTQSTNLVELDLGNTNLIGTVPDIFGPLVSLQGLRLSYNNLTGDLPKSFAGSGIQNLWLNNQKDGYGFTGSIDMLASMTHLSQVWLQKNKFTGPIPDLSNCTGLFDLQLRDNQLTGVVPPSLMTLSSLQNVSLDNNRLQGPFPSFGKGVKVDPLKGINSFCQNTPGPCDSRVTTLLDIAKDFGYPLQLATSWTGNDPCNDWSFIVCSGGKIITVNLVKQNLTGTISPAFSNLTDLRNLHLNDNDLSGSIPESLTNLAQLEVLDVTNNNLSGEVPKFSAKVNFKSAGNVLLGRSGGGGGGGTTPSSGSGDAPSGSPSANASGSSLSPAWIAGIAIIAVFFVAVVLFVFCKCYAKNRRHGKFGRVNNPENGKGEVKIDMMSVSNSNGYGGVPSEIQSQGSERSDIPVFEGGNVTISIQVLRQVTDNFSEDNILGRGGFGVVYKGELHDGTKIAVKRMESVAVGTKGMNEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFDWRENGCAPLTWKQRVAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDTMPDERSHLVSWFRRVLINKENIPKAIDQTLNPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPMVEQWKPTSHEEEEGYGIDLHMSLPQALRRWQANEGTSTMFNDMSFSQTQSSIPAKPSGFADSFDSMDCR. 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01445 935 FunFam Receptor-like kinase TMK4 30 328 - -
Seca5g01445 935 FunFam Leucine-rich repeat receptor-like kinase 332 455 - -
Seca5g01445 935 Pfam Protein tyrosine and serine/threonine kinase 590 861 IPR001245 GO:0004672|GO:0006468
Seca5g01445 935 FunFam receptor protein kinase TMK1 551 664 - -
Seca5g01445 935 MobiDBLite consensus disorder prediction 913 935 - -
Seca5g01445 935 MobiDBLite consensus disorder prediction 455 480 - -
Seca5g01445 935 Gene3D Ribonuclease Inhibitor 31 330 IPR032675 -
Seca5g01445 935 Gene3D Ribonuclease Inhibitor 331 455 IPR032675 -
Seca5g01445 935 SMART LRR_typ_2 116 139 IPR003591 -
Seca5g01445 935 SMART LRR_typ_2 190 213 IPR003591 -
Seca5g01445 935 SMART LRR_typ_2 394 418 IPR003591 -
Seca5g01445 935 ProSiteProfiles Protein kinase domain profile. 587 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01445 935 Pfam Leucine rich repeat N-terminal domain 34 67 IPR013210 -
Seca5g01445 935 Pfam Leucine rich repeat N-terminal domain 334 369 IPR013210 -
Seca5g01445 935 FunFam receptor protein kinase TMK1 665 882 - -
Seca5g01445 935 SMART serkin_6 587 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01445 935 ProSitePatterns Serine/Threonine protein kinases active-site signature. 712 724 IPR008271 GO:0004672|GO:0006468
Seca5g01445 935 SUPERFAMILY Protein kinase-like (PK-like) 563 863 IPR011009 -
Seca5g01445 935 SUPERFAMILY L domain-like 60 440 - -
Seca5g01445 935 CDD STKc_IRAK 593 863 - -
Seca5g01445 935 ProSitePatterns Protein kinases ATP-binding region signature. 593 615 IPR017441 GO:0005524
Seca5g01445 935 Gene3D Transferase(Phosphotransferase) domain 1 665 886 - -
Seca5g01445 935 PANTHER OSJNBA0070M12.3 PROTEIN 17 935 - -
Seca5g01445 935 Gene3D Phosphorylase Kinase; domain 1 550 664 - -
Seca5g01445 935 MobiDBLite consensus disorder prediction 460 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01445 Seca-Chr5 43033012 43037325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01445 68 863 Receptor kinase-like Gene Family AT5G07280 32.262 5.27e-97 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Seca5g01445 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01445 - - gmx:100781851 1467.6