Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01427 ATGGAGTTTGCTAGTGAAGAGCATGGTGATATATTTTATAGGGCATATGCAAAGAGTCATGGTTTTGTTGTTAGGAAAGATGAAATAAGCCGGGATTTTAAGGGCAATGTTATTATGCGTCAGTTTGTTTGCAACAAAGAGGGTACTAGGAAAAAAAACATTTGA 165 0.3576 MEFASEEHGDIFYRAYAKSHGFVVRKDEISRDFKGNVIMRQFVCNKEGTRKKNI. 55
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01427 54 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 1 52 - -
Seca5g01427 54 Pfam FAR1 DNA-binding domain 12 53 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01427 Seca-Chr5 42463767 42463931 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g01427 FAR1 2.1e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01427 - - ccaj:109792835 70.0922