Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01399 ATTATAAAAAACTGTTGCCCACCCACTGTCCAAATACTACTCATTTTGATTTGTGATTGTTGTTACCTCGTGCAGCCGTGCAAGGGTATCCTATTATTTGGTCCCCCTGGAACAGGTAAGACAATGCTTGCAAAGGCAGTTGCCACTGAAGCCGGTGCAAATTTCATTAACATTTCCATGTCAAGCATCACATCTAAGTGGTTTGGTGAGGGTGAAAAATATGTGAAAGCTGTTTTCTCCCTGGCAAGTAAAATTGCTCCTAGTGTGATATTTGTTGACGAAGTTGATAGCATGTTGGGCCGGAGGGAAAATCCAGGAGAGCATGAGACCATGCGAAAGATGAAAAATGAATGCATGGTGAACTGGGATGGCTTACGTACAAAGGATACTGAGCATAGGTGCTTTTTGAGTTTGTCATTATTCTTGACTGAACACGCTGCTGCGCTAGTGGAAGGAAGGCCTGCTCCAGCCTTGAGAGGAAGTGCAGATATCCGATCTTTAAACATGGAAGACTTCAAATGTGCTCATCAACAGGTATGTGCAAGTGTTTCCTCTGAATCCGTAAATATGACTGAGCTTGTGCAATGGAATGAACTACATGGTGAAGGTGGTTCAAGAGTAAAGAAAGCACTCAGCTATTTATTGTCTAAATCATATAACTTAATTTCACATACAATTTATGCTGAAATTCCTAGTGTAGTAATTTACCCCAAAAGGTCATCCTAA 726 0.4132 IIKNCCPPTVQILLILICDCCYLVQPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHETMRKMKNECMVNWDGLRTKDTEHRCFLSLSLFLTEHAAALVEGRPAPALRGSADIRSLNMEDFKCAHQQVCASVSSESVNMTELVQWNELHGEGGSRVKKALSYLLSKSYNLISHTIYAEIPSVVIYPKRSS. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01399 241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 125 IPR027417 -
Seca5g01399 241 SMART AAA_5 26 170 IPR003593 GO:0016887
Seca5g01399 241 Pfam ATPase family associated with various cellular activities (AAA) 30 128 IPR003959 GO:0005524|GO:0016887
Seca5g01399 241 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 152 213 - -
Seca5g01399 241 Gene3D - 24 128 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01399 Seca-Chr5 41843860 41844963 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01399 24 129 Calmodulin-binding Proteins AT3G56690 38.679 1.09e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01399 - - cqi:110724289 214.157