Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01398 ATGGAGAACTTAGATTTTCAATCAGCCAATAACTTGGATGTTGAGACAGAACCGGTCATTGATTTTACTACTGATGATAGTGTTAGTGAAGATGATATTGAACTGACTGATAGTGTTAGTGAAGAGGATACTGAACAGAATGAGAATGATGAAAAAAAAAAGAGTAATGCGGTAGATGTTCAGAATAAGAGGATGTTCGAGTTGTCAGCTGATGATATGATGTGCAAAGAGTTTGGTAGTGAAGAAGAGGCATATGAATTCTATAAGTTGTATGCAAAATATCATGGATTTGTGGTTAGGAAAGATGATGTAACCAAGGATATTAGGGGTAATATTATAATGCGACAATTTGTTTGTAATAGGGAGGGTTTAAGGAACAAGAAGCATTTTATGAGGGTGGATCGGAAGAGAGAACATAGGCCATTGACTCGTACACGGTGTAATGCTAAGCTTCGTATACATTACTATCACAAGAGTCAAATTTGGAAAGTAGTGTCATTTGAGCAGTGCCATAACCATGAACTTACCCCGTCAAGATATGTGCACCTACACACTGCTTACCGTAGTTTGTCACAAGCTGATAAAGCCCAAGTTGATAGTTTGCATGGTTATGGCATTAGAGGGTGTCACATTATGGGATACCTAGTGGCTCAAAAGGGGGGATATTCTCGAGTTGGCTTTTCAAAGAAGGACATGTACAACTAA 705 0.383 MENLDFQSANNLDVETEPVIDFTTDDSVSEDDIELTDSVSEEDTEQNENDEKKKSNAVDVQNKRMFELSADDMMCKEFGSEEEAYEFYKLYAKYHGFVVRKDDVTKDIRGNIIMRQFVCNREGLRNKKHFMRVDRKREHRPLTRTRCNAKLRIHYYHKSQIWKVVSFEQCHNHELTPSRYVHLHTAYRSLSQADKAQVDSLHGYGIRGCHIMGYLVAQKGGYSRVGFSKKDMYN. 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01398 234 Pfam FAR1 DNA-binding domain 86 176 IPR004330 -
Seca5g01398 234 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 26 224 - -
Seca5g01398 234 MobiDBLite consensus disorder prediction 1 58 - -
Seca5g01398 234 MobiDBLite consensus disorder prediction 24 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01398 Seca-Chr5 41803656 41804360 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g01398 FAR1 3.1e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01398 - - ccaj:109792835 261.536