Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01327 ATGGGCCTTGCTTTTCTGCATGAGGAAGCTAAAAGTCCATTGATTTATCGAGACTTCAAAACCCCTAAAATCCTAATGGATTCTGACTATAGTGCGAAACTTTCTAATTTGTGGCTGGTGAAAGATGCCCCAGTGGGTTACTTGAATCATGTGTCAACTAGAGTGATGGGAACTCAAGGGCATGCAATCCCTGAGTATACGATGACAGGGTACTTGAGGTGGAAGATGAATGTGTATAGCTTTGGGGTGGTGTTGCTTAAGATAATGACGGGGAGAAGTACAATGGATATGTAG 294 0.4286 MGLAFLHEEAKSPLIYRDFKTPKILMDSDYSAKLSNLWLVKDAPVGYLNHVSTRVMGTQGHAIPEYTMTGYLRWKMNVYSFGVVLLKIMTGRSTMDM. 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01327 97 Gene3D Transferase(Phosphotransferase) domain 1 1 97 - -
Seca5g01327 97 ProSiteProfiles Protein kinase domain profile. 1 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01327 97 PANTHER OS01G0588500 PROTEIN-RELATED 2 96 - -
Seca5g01327 97 SUPERFAMILY Protein kinase-like (PK-like) 2 94 IPR011009 -
Seca5g01327 97 Pfam Protein kinase domain 2 94 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01327 Seca-Chr5 41104492 41112223 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01327 1 96 Glycoside Hydrolase AT3G07070 55.208 3.70e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca5g01327 Pkinase 2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01327 - - sly:101249749 134.806