Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01310 ATGGGAAGGGGAAGAGTAGAATTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAACGAAGGAACGGGCTTTTGAAGAAAGCTTATGAGCTTTCAGTTCTATGTGATGCTGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGCAGTTCAAGGTATATATATATATTCACTAAAATGCAACAACACAATAAATAA 228 0.3816 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSRYIYIFTKMQQHNK. 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01310 75 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca5g01310 75 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 64 - -
Seca5g01310 75 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca5g01310 75 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Seca5g01310 75 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca5g01310 75 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca5g01310 75 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca5g01310 75 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca5g01310 75 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca5g01310 75 Gene3D - 13 75 IPR036879 GO:0003677|GO:0046983
Seca5g01310 75 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Seca5g01310 75 FunFam MADS-box transcription factor MADS-MC 13 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01310 Seca-Chr5 40753837 40754064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01310 1 74 MADS-box Gene Family AT1G24260 85.135 1.47e-39 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca5g01310 SRF-TF 2.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01310 - K09264 oeu:111372629 128.642