Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01309 ATGGGAGAAGATCTTGGTCCTCTAAACAGCAAAGAGCTTGAAACACTTGAAAGGCAGCTAGATTCTTCTTTGAAGCAAATCAGATCAACAAGGACCCAATTCATGCTGGACCAGCTCTCTGATCTTCAACGTAAGGAACACTTGCTAAGTGAGGCAAACAGAGCTCTCAGACAAAGGCTGGAAGGGTATCAAATAAATCCACTCCAACTGAATCCCAATGCTGATGATATGGGATATGGGCGCCATCCAGGTCAAACCCAGGGTGATGCTCTCTTTCAACCATTGGAGTGTGAGCCAACATTACAAATTGGATATCAGCCTGATCCAGTATCAGTGGTGACAGCAGGGCCAAGCATGAATAACTACATGGCAGGATGGTTACCATGA 387 0.4548 MGEDLGPLNSKELETLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHLLSEANRALRQRLEGYQINPLQLNPNADDMGYGRHPGQTQGDALFQPLECEPTLQIGYQPDPVSVVTAGPSMNNYMAGWLP. 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01309 128 ProSiteProfiles K-box domain profile. 1 66 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca5g01309 128 Pfam K-box region 1 60 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca5g01309 128 Coils Coil 13 33 - -
Seca5g01309 128 Coils Coil 39 59 - -
Seca5g01309 128 MobiDBLite consensus disorder prediction 67 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01309 Seca-Chr5 40747198 40749846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01309 1 128 MADS-box Gene Family AT1G24260 60.305 2.41e-40 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01309 - - gmx:100805078 235.728