Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01299 ATGCCACCTGGTTTGGAATACAACATTGATGAGCTGTATCAAGAAGCTAAGAAGAGATGGCTCAAGCCTGTAGAAGTGCTTTACATTTTAAGGAATCATGAGAAGATTGAGTTCACCCATGTGCCTCCTCATCAGCCACCTGGTGGTTCCTTGTTTCTATTTAATAGAAGAGTCCTGCGCTTCTTCCGTAAAGATGGCCACAATTGGCGGAAGAAAAGGGATGGAAGAACTGTGGGAGAAGCACATGAACGGCTTAAGGTTGGCAATGTTGAAATCCTAAACTGTTACTATGCACATGGAGAGGAGAACCGTACTTTCCAGAGGCGGAGCTATTGGATGTTGGACCCGGAATATGAGCATATTGTTCTTGTGCATTACAGAGATACAAATAGGGGAACATCCAATGCTGGACCTGCCACACAATTGTCACCAGGTTGCTCCTCTGTATTTAGTCAGAATCGTAGCTCAAATACTACTCAGAACCATGGGACAATATCCGTGTTTGATGATTCATGTGAACCTAATCCAAATTTCTCTAGTCCAGGTTCTTTAGAAGTTACCTCTGGTATATTCAGCAGGAACAATGAAATTGATCACTTGGATGAAGCAGACATACAAGCTTTGCGCCAATTGGAGAAACAGTTAAATGATGACAGCCTCAAAGAAATTTTTCCCTTTCACAGTGAGTATGAAATTCCTCAAGATTTAATTCCATGCCAAGATCAAAAGGTGGTTTACAAACAAGATAAATCCCCAGCATTCCCTGGACCAGATGGTTGTGAACAGCCTTATGATGGATATAATGGAGGACATGATGACAGTGGTAATTATTATCATGAAGGGACCTTATCGTGGGACTGGGCGGAGGTGCTGGATTCATGTAAGTTCTCATCTGTGATCAAGTTACCAGAGCAACATTCATATGAGGCATTTGAAAATGAAACGTCACTATCTTCCTCAGGAAGGGAAATTATTGTCAACCAGGAAAACGGTCACTGGATAAACCCCAACAGTCCCATATTACCAGATTTCTTTCCATGTCCTCAAGATCCTCCATATTCTTTGGTAGAAACTCAAAGAACAAATTCTGACTATGCAACATGGTTTGACCAAACCCAAATTCAAGAACCTCTGGGTGCAGATTCAAGCTTGACTGTTGCACAGAAACAGAAATTTACAATTAAGGCAGTCTCCCCAGAATACTGTTATGCTGCTGAGACTACAAAGGTGATCATTGTTGGGTCATTTCTCTGCCCTCACTCAGATTCTACCTGGGCTTGTATGTTTGGTGATGTTGAAGTTCAGGTTGAGATAATTCAGGATGGAGTAATTAGCTGTGAAGCTCCATCCAACCTTCTTGGAAAGGTTACTTTGTGCATTACTTCAGGAAATAGGCAGCCATGCAGTGAAGTCAGAGAATTTGAGTTTCGTAATAAGACCAATAGTTGTACTCGCTGTAATTCATTGGACCCAGAAGCCACTAGAAATCCAGAAGAGTTGTTATTACTTGTTCGATTTGCAGAGATGCTCCTTTCTGCTTCAACTATAAAGGATGAAAACAGAGAATCTGGAGGTCATCTTCCAACAAAACAGAAAGAAGATGATGATTCATGGAGCCATATTATAGATGCTCTCCTAGTTGGCAGTGGAACTTCATCTGATACTATTGATTTTCTTCTTGAAGAGCTGCTGAAGGATAAGCTGCAGCTCTGGCTTTCTTGCAGATCCCGGGAAACAGATGAAGGGACAGATTGTTATTTGTCCAAGAAAGAGCAGGGGATTATTCACATGGTTTCTGGGTTGGGTTTTCAGTGGGCCTTGAACCCCATTCTCAGTTGCGGCGTGAATGTAAATTTCCGTGACATCAATGGATGGACCGCCCTTCATTGGGCTGCACGGTTTGGAAGGGAAAAAATGGTTGCTTCACTTATAGTAGCTGGTGCATCTGCTGGAGCAGTGACAGATCCAAGTTCACAAGATCCAACCGGTAGGACTGCTGCATCTATTGCAGCCAGCAATGGTCATAAGGGACTGGCAGGTTATCTTGCAGAGGCAGATCTAACAAGCCATCTGTCATCCCTCACATTGAAAGAGGGGGCGATTTGTAAAGCTTCTTTTGAGCTTGCAGCTGAGTTAACTGTCAGTAGTGTCTCTAAGGAAAATCTTGTAGCTAGTGAGGATCAGGTTTCACTACAGAAATCCTTGGATGCTGTCAGAAATGCTTCTCAGGCAGCTGCACGGATACAAGCTGCTTTTCGTGCACATTCTTTCAGAAAACAAAAAGAGAGAGAAGCTGCCACTGCTGCAGCTGCCACCTGTCTAGATGGATGTGGTATCAGTGCAGGTAGCATTGATGATAACATTTCAGCGCTTTGTTCCATGTCAAAACCTTGCTTTTGGAGTTTACGTGATTACAATTCTGCTGCCTTATCAATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGAATTCTTAGCATTGCGCCAAAAAGTAGTAAAGATACAGGCTGTTGTGAGGGGTTACCAGACTCGGAAGCAATACAAGTTAATAATATGGGCTGTTGGAATCTTGGACAAGGTTGTGCTACGATGGCGGAGAAAACGAATTGGTTTACATAACTTCCGGCAAGAAATGGAGTCAAATGAAGAAAATGATGATGAAGATTTTCTCAAGGTGTTCCGAAAAGAGAAAGTACATGTAGCAATTGAAAAGGCTTTGAAACAGGTGCTTTCCATGGTCCATTCTACTGGTGCTCGTCAGCAATATAGTCGCTTGCTTGAGCTGTATCGTCAAGCCAAGGATGAACTTGGCACCACTAAAGATGAAAAACCGTCCTCAACTTCTGTAGAGGGTGCTTTCAATATAGAAGATGATGACTTGTGTCAATTTCCCTTGGAAACGCTCTAG 2910 0.4268 MPPGLEYNIDELYQEAKKRWLKPVEVLYILRNHEKIEFTHVPPHQPPGGSLFLFNRRVLRFFRKDGHNWRKKRDGRTVGEAHERLKVGNVEILNCYYAHGEENRTFQRRSYWMLDPEYEHIVLVHYRDTNRGTSNAGPATQLSPGCSSVFSQNRSSNTTQNHGTISVFDDSCEPNPNFSSPGSLEVTSGIFSRNNEIDHLDEADIQALRQLEKQLNDDSLKEIFPFHSEYEIPQDLIPCQDQKVVYKQDKSPAFPGPDGCEQPYDGYNGGHDDSGNYYHEGTLSWDWAEVLDSCKFSSVIKLPEQHSYEAFENETSLSSSGREIIVNQENGHWINPNSPILPDFFPCPQDPPYSLVETQRTNSDYATWFDQTQIQEPLGADSSLTVAQKQKFTIKAVSPEYCYAAETTKVIIVGSFLCPHSDSTWACMFGDVEVQVEIIQDGVISCEAPSNLLGKVTLCITSGNRQPCSEVREFEFRNKTNSCTRCNSLDPEATRNPEELLLLVRFAEMLLSASTIKDENRESGGHLPTKQKEDDDSWSHIIDALLVGSGTSSDTIDFLLEELLKDKLQLWLSCRSRETDEGTDCYLSKKEQGIIHMVSGLGFQWALNPILSCGVNVNFRDINGWTALHWAARFGREKMVASLIVAGASAGAVTDPSSQDPTGRTAASIAASNGHKGLAGYLAEADLTSHLSSLTLKEGAICKASFELAAELTVSSVSKENLVASEDQVSLQKSLDAVRNASQAAARIQAAFRAHSFRKQKEREAATAAAATCLDGCGISAGSIDDNISALCSMSKPCFWSLRDYNSAALSIQKKYRGWKGRKEFLALRQKVVKIQAVVRGYQTRKQYKLIIWAVGILDKVVLRWRRKRIGLHNFRQEMESNEENDDEDFLKVFRKEKVHVAIEKALKQVLSMVHSTGARQQYSRLLELYRQAKDELGTTKDEKPSSTSVEGAFNIEDDDLCQFPLETL. 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01299 969 Gene3D - 805 852 - -
Seca5g01299 969 SMART ANK_2a 623 652 IPR002110 GO:0005515
Seca5g01299 969 SMART ANK_2a 662 691 IPR002110 GO:0005515
Seca5g01299 969 ProSiteProfiles IQ motif profile. 741 770 IPR000048 GO:0005515
Seca5g01299 969 SMART CG_1_2 12 130 IPR005559 GO:0003677
Seca5g01299 969 Pfam IPT/TIG domain 393 470 IPR002909 -
Seca5g01299 969 MobiDBLite consensus disorder prediction 132 164 - -
Seca5g01299 969 Pfam Ankyrin repeats (3 copies) 607 687 IPR002110 GO:0005515
Seca5g01299 969 FunFam Calmodulin-binding transcription activator 4 isoform A 503 688 - -
Seca5g01299 969 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Seca5g01299 969 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 936 - -
Seca5g01299 969 CDD IPT 393 477 - -
Seca5g01299 969 FunFam Calmodulin-binding transcription activator 2 804 852 - -
Seca5g01299 969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 802 856 IPR027417 -
Seca5g01299 969 SUPERFAMILY E set domains 393 477 IPR014756 -
Seca5g01299 969 SMART iq_5 827 849 IPR000048 GO:0005515
Seca5g01299 969 SMART iq_5 740 762 IPR000048 GO:0005515
Seca5g01299 969 SMART iq_5 804 826 IPR000048 GO:0005515
Seca5g01299 969 Pfam IQ calmodulin-binding motif 830 849 IPR000048 GO:0005515
Seca5g01299 969 Pfam IQ calmodulin-binding motif 807 825 IPR000048 GO:0005515
Seca5g01299 969 ProSiteProfiles Ankyrin repeat region circular profile. 623 649 - -
Seca5g01299 969 Gene3D Immunoglobulins 387 482 IPR013783 -
Seca5g01299 969 SUPERFAMILY Ankyrin repeat 593 686 IPR036770 -
Seca5g01299 969 ProSiteProfiles IQ motif profile. 805 834 IPR000048 GO:0005515
Seca5g01299 969 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Seca5g01299 969 Gene3D - 504 686 IPR036770 -
Seca5g01299 969 ProSiteProfiles IQ motif profile. 828 852 IPR000048 GO:0005515
Seca5g01299 969 ProSiteProfiles Ankyrin repeat profile. 623 655 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01299 Seca-Chr5 40410546 40420204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01299 5 965 CAMTA Transcription Factor Family AT1G67310 48.535 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Seca5g01299 CG-1 1.1e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01299 K21596 - gmx:100791430 1313.13