Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01294 ATGGAACATGTGAATGTGTACAGACCGAATGGTAAGCAAACACGTAATTTTTTCGTTCCACTTGCCGCTGTTATTGGAACCACACAACGCTGGAACTGGTATCACATTGCCCATGGCAAGGCTCATTGTGCCGTGTTTGGAAATTATGTTGACATTGTGAACGATTTTGTTAAAGAAATTGGGACTGAGCTACCAGTTGTGGTCATACAGTATGCCAAAGTAAAGAGATTCCGAGGTGTTGTTGTTTTACAAAATGTGCTCAATACAACACATATTCTTTGGAATCCTGACATATCTGAGGTTGTTGAATTTAGGCATAGCATTGTTTCAAGGGGTGTGGACATTTGTGGTCCCCTCGAAACCATAGAAGATCACACCGCGAGTGCTTCATCAGGCGAGGAATTCTTGCATATGTATCCTAGAAAGAGTATAAGTGAACTCAATAACACTGAAGACGATGGGCTTTTCATCATTCTTGCAACTATAGTCACGGTCCTGACTGACAACAACTGGTGGTACTCTGTATGCAAGTGCAACAGAGCTGTCATAGTTGATGGGGATAGTTACTATTGTCCCAATTGTACGTGTACTGCGACTGATGTAACCCTGAGATATAAGTTGAAGGTTGAAGTGTTTGATGGAGATGACACAACTGCTTTTGTCATGTTTGATAGTGACGCTGAGTTGGTCACTGGTGTTTCGTGTTCTGTGCTTCTAGATGTTTACAAGGAGAGTGGAATCGACCAAATCCCACCAGAACTCGAAGACTTAGGTGGTAAGGAGCTCCTCTTCAAGGTGGAGAAAGCTGATGACTATGCATTCAAATACGATGACACATTTAAGGTGAAGAGGGTTTACATTGTCAGCGAAATCATTGGGCACTACACGGACATGAAGAAGATATCAACCCCCAAAGTTGTGAGAACTGTTTTAATAACTTATTTTGATGTATTGGGCCATGGTTGTTTTTTTTTATCCCGTTGA 984 0.4177 MEHVNVYRPNGKQTRNFFVPLAAVIGTTQRWNWYHIAHGKAHCAVFGNYVDIVNDFVKEIGTELPVVVIQYAKVKRFRGVVVLQNVLNTTHILWNPDISEVVEFRHSIVSRGVDICGPLETIEDHTASASSGEEFLHMYPRKSISELNNTEDDGLFIILATIVTVLTDNNWWYSVCKCNRAVIVDGDSYYCPNCTCTATDVTLRYKLKVEVFDGDDTTAFVMFDSDAELVTGVSCSVLLDVYKESGIDQIPPELEDLGGKELLFKVEKADDYAFKYDDTFKVKRVYIVSEIIGHYTDMKKISTPKVVRTVLITYFDVLGHGCFFLSR. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01294 327 PANTHER OS03G0429900 PROTEIN 72 270 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca5g01294 327 Gene3D - 124 294 IPR012340 -
Seca5g01294 327 CDD RPA1_DBD_C 142 285 IPR047192 -
Seca5g01294 327 Gene3D - 36 115 IPR012340 -
Seca5g01294 327 SUPERFAMILY Nucleic acid-binding proteins 139 267 IPR012340 -
Seca5g01294 327 Pfam Replication factor-A C terminal domain 157 271 IPR013955 -
Seca5g01294 327 SUPERFAMILY Nucleic acid-binding proteins 42 108 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01294 Seca-Chr5 40367501 40370128 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01294 50 266 Core DNA Replication Machinery Family AT5G08020 26.496 3.46e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01294 - - lja:Lj1g3v3385890.1 251.521