Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01293 ATGAGTTTGCTCCATGTAATTGGGTTTGGTCTAAAGGTGGGGCATCTACTTTTGGTGCTATGTTGCTGGATTGTATCTGTCATTTACATCAACTGGTTCATTAGCGGTGGAATTATGGAAACAAAGATGGGTTTTCTGGGCTTTGGTGGCAAGATGTGGCTCAAATGGTGGGAGAAGATCTTGGGGAGCAGTTGCAAAATCCACAAACACTACTACCAGTGTATTGGGTCCATGAAAGTCAGGAGAACCTTGTGGAGGAAACTTTTGCTCATATGGGTGCTGATTTGGTCCATAGTATCTTTGTGGATCTTCTGCTGTATGAGCTTACAAGCCACTGAGAAGAGGAAAGAAACTCTTGCTAGCATGTGTGATGAAAGAGCTAGGATGCTTCAGGATCAGTTTAATGTGAGTATGAACCATGTTCAAGCCATGTCCATTCTCATCTCAACCTTCCATCATGCCAAAAACCCCTCTGCCATTGACCAGAGAACATTTGCCAAGTATACAGAAAGAACTGCTTTTGAGAGGCCTCTTACAAGTGGTGTTGCATATGCTGTAAGGGTGCTCCATTCTGAAAGGGAACAATTTGAGAAGCAACAAGGGTGGACTATTAAGAGGATGGATACCCTGGAACAGAACCCGGTTCATAAGGATGAGTATGCCCCAGAGGCATTGGAGCCATCCCCCATTCAGGAAGAATATGCTCCTGTCATCTTTGCACAGGAAACAATTTCACATGTCATATCTGTTGATGTGCTTTCTGGAAAGGAAGACCGTGAAAATGTGTTGCGTGCAAGAGAATCAGGCAAAGGGGTTTTAACTGCTCCTTTCAGGCTGTTGAAAACAAACCGTCTAGGGGTTATCCTCACATTTGCTGTTTACAAGAGAGATCTTCCATCAAATGCAACCCCAAATGAAAGGGTTCAAGCAACTGATGGGTATCTTGGTGGGGTATTTGAAATTGAGTCATTAGTGGAGAAATTGCTTCAGCAACTTGCTAGCAAACAAACTGTAATTGTGAATGTGTATGATACTACAAATCAAACCCACCCAATTGCCATGTATGGTTCAAATGTATCAGGTGATGGTTTCTATCATGTGAGCAGTCTTAACTTTGGAGATCCTTTCAGGAAGCATGAGATGCACTGCAGGTTCAAGCAGAAACCACCATGGCCATGGTTGGCAATAACTACATCGTTTGGCATCCTTGTTATTGCACTTCTTGTTGGACACATTTTTCATGCAACTGTGAACAGAATTGCCAAAGTAGAGGATGATTACCATGAGATGATGGAGCTTAAAAAACGAGCTGAGGCAGCTGATGTTGCAAAATCCCAGTTCCTTGCAACTGTTTCCCATGAGATCAGAACTCCAATGAATGGTGTTTTAGGGATGTTGAATATGCTTATGGACACAGATCTAGATGTAACACAACAGGAATATGTCAGAACTGCACAGGGAAGTGGAAAAGCTCTTGTGTCAATTATAAATGAGGTTTTGGACCTGGCAAAGATTGAAGCTGGTAAACTAGAGCTTGAGGCTGTGCTGTTTGACATACGGGCAATTTTGGATGATGTGTTGTCACTATTTTTTGAGAAGTCTCAAGGAAAAGGAGTAGAGTTGGCAGTCTATGTCTCAGATCAGGTTCCTCAACAGCTAATTGGTGATCCAGGAAGGTTTAGACAAATAATTACAAATCTCATGGGTAACTCAATTAAGTTCACAGATAAAGGACATATCTTTGTCACTGTCCATCTTGTTGAGGAGGTTGTCCATTCAATAGAGGTTGAGACAACAGAAAGCACAGAATCTACAGATACATTAAGTGGTTTCCCAGTTGCTGATGGTCGCCTGAGCTGGAAAGGATTCCGGGCTTTCAGTCAAGAGGGACCTCTTGGTTCTTTCTCATCCTCCTCCAATGATCTCATCAATTTGATTGTATCAGTTGAGGATACAGGTGAAGGTATTCCTGAAGAAGCTCAATCCAAGATCTTCACTCCATTCATGCAGGTTGGTCCATCCATCTCCAGGAAACATGGAGGAACTGGTATTGGTCTAAGCATTAGCAAGTGTTTGGTTAGCCTCATGAATGGGGAAATTGGGTTTGTGAGCAGACCCAAGATTGGTTCCACTTTCACATTTACTGCTGTCTTCACCAATGCATGTCCCAATTCAAGTGAGTTTAAAAGTCAGCAAATCAACAACCAATCTCATCCTGCATCCTCAGAATTTCAGGGCATGACTGCATTAGTCATTGACCCCAGACCAGTTAGAGCTAAAGTGTCAAGATATCACATCCAAAGGCTTGGCATTCATGTTGAATTAGTTTCAGATTTAAGTCAAGGTTTGTCCACCATAAGCAATGGCAATGTAGTTATTAATATGGTCCTGATTGAACAAGAGGTCTGGGATAGAGACTCAGGCATATCATCTCACTTTGTCAATAACATTAGGAAAGTTGATCATGTAGTTCCTCCAAAGCTATTCATTCTTGTTAATTCTAGTAGTTCTTCTAGAGCAAGTTCTGTAACATCAGGTGTTCATAATCCAACTGTCATCACAAAACCTCTGAGAGCAAGTATGCTTGCTGCTTCACTACAAAGAGCAATGAGTGTTGGGAACAAGGGGAATCCTCGAAATGGGGAGCATCAGAGTTTGTCACTCCACCATCTTCTTCTTGGGAGGAAAATTCTGATTGTGGATGACAATAGTGTGAACCGCACAGTAGCAGCTGGTGCTTTGAAAAAATATGGAGCTGATGTGGTTTGTGTAAGCAGTGGAAAAGATGCTATCTCTTTGCTAAAGCCACCCCATGAGTTTGATGCATGCTTCATGGATATTCAAATGCCAGAAATGGATGGGTATGCAACAGAAAAACTTTCTTCTAAATCTTGGCAATTATTGAGTTTTGAAGCTACACGTGCAATTCGGGAGATTGAACAGAATGTGAACAGAGAAGTATCTGTTGAAGCCTTTGAGAATAATCCAAACTGGCATCTGCCCATTTTGGCTATGACTGCAGATGTGATCCAAGCTACACATGAGGAATGCCTGAAGTGTGGGATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAGCTTTATAGAGAAGTTTCACGGTTTTTCCAATGA 3135 0.4201 MSLLHVIGFGLKVGHLLLVLCCWIVSVIYINWFISGGIMETKMGFLGFGGKMWLKWWEKILGSSCKIHKHYYQCIGSMKVRRTLWRKLLLIWVLIWSIVSLWIFCCMSLQATEKRKETLASMCDERARMLQDQFNVSMNHVQAMSILISTFHHAKNPSAIDQRTFAKYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDEYAPEALEPSPIQEEYAPVIFAQETISHVISVDVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERVQATDGYLGGVFEIESLVEKLLQQLASKQTVIVNVYDTTNQTHPIAMYGSNVSGDGFYHVSSLNFGDPFRKHEMHCRFKQKPPWPWLAITTSFGILVIALLVGHIFHATVNRIAKVEDDYHEMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLNMLMDTDLDVTQQEYVRTAQGSGKALVSIINEVLDLAKIEAGKLELEAVLFDIRAILDDVLSLFFEKSQGKGVELAVYVSDQVPQQLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLVEEVVHSIEVETTESTESTDTLSGFPVADGRLSWKGFRAFSQEGPLGSFSSSSNDLINLIVSVEDTGEGIPEEAQSKIFTPFMQVGPSISRKHGGTGIGLSISKCLVSLMNGEIGFVSRPKIGSTFTFTAVFTNACPNSSEFKSQQINNQSHPASSEFQGMTALVIDPRPVRAKVSRYHIQRLGIHVELVSDLSQGLSTISNGNVVINMVLIEQEVWDRDSGISSHFVNNIRKVDHVVPPKLFILVNSSSSSRASSVTSGVHNPTVITKPLRASMLAASLQRAMSVGNKGNPRNGEHQSLSLHHLLLGRKILIVDDNSVNRTVAAGALKKYGADVVCVSSGKDAISLLKPPHEFDACFMDIQMPEMDGYATEKLSSKSWQLLSFEATRAIREIEQNVNREVSVEAFENNPNWHLPILAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYREVSRFFQ. 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01293 1044 SMART HisKA_10 443 508 IPR003661 GO:0000155|GO:0007165
Seca5g01293 1044 Pfam His Kinase A (phospho-acceptor) domain 443 508 IPR003661 GO:0000155|GO:0007165
Seca5g01293 1044 SUPERFAMILY CheY-like 894 1042 IPR011006 -
Seca5g01293 1044 CDD HATPase_EvgS-ArcB-TorS-like 560 718 - -
Seca5g01293 1044 Pfam Response regulator receiver domain 897 957 IPR001789 GO:0000160
Seca5g01293 1044 SUPERFAMILY CheY-like 743 871 IPR011006 -
Seca5g01293 1044 Gene3D CHASE domain 160 389 IPR042240 -
Seca5g01293 1044 CDD HisKA 443 504 IPR003661 GO:0000155|GO:0007165
Seca5g01293 1044 FunFam Histidine kinase 4 415 506 - -
Seca5g01293 1044 SMART HKATPase_4 555 720 IPR003594 -
Seca5g01293 1044 Gene3D - 507 721 IPR036890 -
Seca5g01293 1044 PANTHER TWO-COMPONENT HISTIDINE KINASE 120 1036 - -
Seca5g01293 1044 ProSiteProfiles CHASE domain profile. 156 382 IPR006189 -
Seca5g01293 1044 CDD REC_hyHK_CKI1_RcsC-like 897 1039 - -
Seca5g01293 1044 SMART REC_2 895 1039 IPR001789 GO:0000160
Seca5g01293 1044 PRINTS Bacterial sensor protein C-terminal signature 680 698 IPR004358 GO:0016310|GO:0016772
Seca5g01293 1044 PRINTS Bacterial sensor protein C-terminal signature 645 659 IPR004358 GO:0016310|GO:0016772
Seca5g01293 1044 PRINTS Bacterial sensor protein C-terminal signature 663 673 IPR004358 GO:0016310|GO:0016772
Seca5g01293 1044 PRINTS Bacterial sensor protein C-terminal signature 704 717 IPR004358 GO:0016310|GO:0016772
Seca5g01293 1044 Gene3D - 411 506 - -
Seca5g01293 1044 FunFam Histidine kinase 4 160 389 - -
Seca5g01293 1044 ProSiteProfiles Response regulatory domain profile. 748 870 IPR001789 GO:0000160
Seca5g01293 1044 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 428 509 IPR036097 GO:0000155|GO:0007165
Seca5g01293 1044 SMART CHASE_2 156 357 IPR006189 -
Seca5g01293 1044 Pfam CHASE domain 159 355 IPR006189 -
Seca5g01293 1044 Gene3D - 892 1044 - -
Seca5g01293 1044 ProSiteProfiles Response regulatory domain profile. 896 1043 IPR001789 GO:0000160
Seca5g01293 1044 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 497 715 IPR036890 -
Seca5g01293 1044 ProSiteProfiles Histidine kinase domain profile. 450 720 IPR005467 -
Seca5g01293 1044 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 555 718 IPR003594 -
Seca5g01293 1044 Gene3D - 107 159 - -
Seca5g01293 1044 CDD PRTases_typeI 849 924 IPR000836 -
Seca5g01293 1044 Coils Coil 420 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01293 Seca-Chr5 40356461 40363780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01293 1 1043 Miscellaneous Gene Families AT1G27320 68.391 0.0 1422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca5g01293 CHASE 1.8e-36 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01293 K14489 - gmx:100776798 1685.23